Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STMM8_RS08495 Genome accession   NZ_CP065787
Coordinates   1632135..1633091 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain MM8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1627135..1638091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS08465 (STMM8_08430) proC 1627691..1628461 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STMM8_RS08470 (STMM8_08435) - 1628491..1629152 (-) 662 Protein_1610 CPBP family intramembrane glutamic endopeptidase -
  STMM8_RS08475 (STMM8_08440) - 1629255..1629698 (-) 444 WP_002946118.1 hypothetical protein -
  STMM8_RS08480 - 1629772..1630197 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  STMM8_RS08485 (STMM8_08450) - 1630440..1630637 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STMM8_RS08490 (STMM8_08455) - 1630886..1632079 (-) 1194 WP_022096898.1 acetate kinase -
  STMM8_RS08495 (STMM8_08460) comYH 1632135..1633091 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STMM8_RS08500 (STMM8_08465) comGG 1633136..1633453 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STMM8_RS08505 (STMM8_08470) comYF 1633431..1633868 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STMM8_RS08510 (STMM8_08475) comGE 1633852..1634145 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STMM8_RS08515 (STMM8_08480) comYD 1634117..1634545 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STMM8_RS08520 (STMM8_08485) comYC 1634505..1634831 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STMM8_RS08525 (STMM8_08490) comYB 1634828..1635928 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STMM8_RS08530 (STMM8_08495) comGA/cglA/cilD 1635810..1636751 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STMM8_RS08535 (STMM8_08500) - 1636832..1637194 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=514284 STMM8_RS08495 WP_011226622.1 1632135..1633091(-) (comYH) [Streptococcus thermophilus strain MM8]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=514284 STMM8_RS08495 WP_011226622.1 1632135..1633091(-) (comYH) [Streptococcus thermophilus strain MM8]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAGCTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682