Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KV188_RS09970 Genome accession   NZ_CP078508
Coordinates   2069180..2070520 (+) Length   446 a.a.
NCBI ID   WP_005603748.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064180..2075520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV188_RS09945 (KV188_09945) msrB 2064643..2065038 (-) 396 WP_218633959.1 peptide-methionine (R)-S-oxide reductase MsrB -
  KV188_RS09950 (KV188_09950) gap 2065261..2066265 (+) 1005 WP_039709004.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  KV188_RS09955 (KV188_09955) - 2066461..2067513 (+) 1053 WP_005607179.1 rod shape-determining protein -
  KV188_RS09960 (KV188_09960) mreC 2067630..2068679 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  KV188_RS09965 (KV188_09965) mreD 2068679..2069167 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  KV188_RS09970 (KV188_09970) rarA 2069180..2070520 (+) 1341 WP_005603748.1 replication-associated recombination protein A Machinery gene
  KV188_RS09975 (KV188_09975) znuB 2070601..2071386 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  KV188_RS09980 (KV188_09980) - 2071565..2072362 (+) 798 WP_039709005.1 class II glutamine amidotransferase -
  KV188_RS09985 (KV188_09985) - 2072442..2073518 (-) 1077 WP_039709006.1 homoserine O-acetyltransferase -
  KV188_RS09990 (KV188_09990) - 2073810..2074499 (+) 690 WP_039709007.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50223.85 Da        Isoelectric Point: 6.6974

>NTDB_id=514063 KV188_RS09970 WP_005603748.1 2069180..2070520(+) (rarA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=514063 KV188_RS09970 WP_005603748.1 2069180..2070520(+) (rarA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGCACCGGTAAAACGACGTTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACATCGCTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

94.843

0.39