Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   KWY99_RS05090 Genome accession   NZ_CP078118
Coordinates   961586..962527 (+) Length   313 a.a.
NCBI ID   WP_003694978.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 956586..967527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS05065 (KWY99_05065) - 957242..957751 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY99_RS05070 (KWY99_05070) - 957981..958562 (-) 582 WP_003687910.1 superoxide dismutase -
  KWY99_RS05075 (KWY99_05075) dnaB 958726..960132 (+) 1407 WP_003694974.1 replicative DNA helicase -
  KWY99_RS05080 (KWY99_05080) pilH 960287..960949 (+) 663 WP_003687912.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY99_RS05085 (KWY99_05085) pilV/pilI 960981..961589 (+) 609 WP_003694976.1 type IV pilus modification protein PilV Regulator
  KWY99_RS05090 (KWY99_05090) pilJ 961586..962527 (+) 942 WP_003694978.1 PilW family protein Machinery gene
  KWY99_RS05095 (KWY99_05095) pilK 962506..963117 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY99_RS05100 (KWY99_05100) pilL 963119..963592 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  KWY99_RS05105 (KWY99_05105) - 963662..963970 (-) 309 WP_010951048.1 AzlD family protein -
  KWY99_RS05110 (KWY99_05110) - 963967..964674 (-) 708 Protein_987 AzlC family ABC transporter permease -
  KWY99_RS05115 (KWY99_05115) dut 964840..965292 (+) 453 WP_003687923.1 dUTP diphosphatase -
  KWY99_RS05120 (KWY99_05120) dapC 965370..966557 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34386.09 Da        Isoelectric Point: 9.1948

>NTDB_id=513824 KWY99_RS05090 WP_003694978.1 961586..962527(+) (pilJ) [Neisseria gonorrhoeae strain MS11]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGNDVVFNVAQKNALFSLKRNSTNSTNKLIPITESPNINYQNFFQVSSALIFQYGIDDVDASADTTVVSSCAA
ISKPGKQIPTLENAKKELKIQNSDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMRVRY
IYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=513824 KWY99_RS05090 WP_003694978.1 961586..962527(+) (pilJ) [Neisseria gonorrhoeae strain MS11]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAATGATGTTGTTTTCAATGTGGCGCAAAAAAACGCTCTTTTTTCCTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTGATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAAATGCAAAAAAAGAATTGAAGATTCAGAATTCTGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGAGAGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

100

100

1