Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6G23_RS01730 Genome accession   NZ_CP065735
Coordinates   75519..76307 (-) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_866     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 70519..81307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G23_RS01710 (I6G23_01710) gatB 71166..72599 (-) 1434 WP_010905166.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  I6G23_RS01715 (I6G23_01715) - 72639..73241 (-) 603 WP_010905165.1 NUDIX hydrolase -
  I6G23_RS01720 (I6G23_01720) gatA 73245..74705 (-) 1461 WP_010905164.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  I6G23_RS01725 (I6G23_01725) gatC 74705..75010 (-) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I6G23_RS01730 (I6G23_01730) codY 75519..76307 (-) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6G23_RS01735 (I6G23_01735) - 76460..77674 (-) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  I6G23_RS01740 (I6G23_01740) - 77743..79326 (-) 1584 WP_010905162.1 APC family permease -
  I6G23_RS01745 (I6G23_01745) - 79522..79761 (-) 240 WP_010905161.1 hypothetical protein -
  I6G23_RS01750 (I6G23_01750) - 79773..79982 (-) 210 WP_010905160.1 hypothetical protein -
  I6G23_RS01755 (I6G23_01755) - 80147..80938 (-) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=513652 I6G23_RS01730 WP_003129722.1 75519..76307(-) (codY) [Lactococcus lactis strain FDAARGOS_866]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=513652 I6G23_RS01730 WP_003129722.1 75519..76307(-) (codY) [Lactococcus lactis strain FDAARGOS_866]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462