Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6G41_RS07320 Genome accession   NZ_CP065710
Coordinates   1434427..1436823 (-) Length   798 a.a.
NCBI ID   WP_197910715.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_884     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429427..1441823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G41_RS07300 (I6G41_07300) - 1430333..1430665 (-) 333 WP_002507440.1 DUF1292 domain-containing protein -
  I6G41_RS07305 (I6G41_07305) ruvX 1430682..1431110 (-) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  I6G41_RS07310 (I6G41_07310) - 1431114..1431374 (-) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  I6G41_RS07315 (I6G41_07315) alaS 1431443..1434073 (-) 2631 WP_197910714.1 alanine--tRNA ligase -
  I6G41_RS07320 (I6G41_07320) recD2 1434427..1436823 (-) 2397 WP_197910715.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6G41_RS07325 (I6G41_07325) - 1436827..1437492 (-) 666 WP_002507435.1 tetratricopeptide repeat protein -
  I6G41_RS07330 (I6G41_07330) mnmA 1437617..1438729 (-) 1113 WP_002507434.1 tRNA 2-thiouridine(34) synthase MnmA -
  I6G41_RS07335 (I6G41_07335) - 1438730..1439872 (-) 1143 WP_002507433.1 cysteine desulfurase family protein -
  I6G41_RS14045 - 1439933..1440469 (-) 537 WP_332262519.1 ATP-binding cassette domain-containing protein -
  I6G41_RS07340 (I6G41_07340) - 1440459..1441565 (-) 1107 WP_002507431.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89789.58 Da        Isoelectric Point: 4.5294

>NTDB_id=513335 I6G41_RS07320 WP_197910715.1 1434427..1436823(-) (recD2) [Staphylococcus equorum strain FDAARGOS_884]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFNSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVMEMTQDMLSQPPAEMIDAQQLMNVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=513335 I6G41_RS07320 WP_197910715.1 1434427..1436823(-) (recD2) [Staphylococcus equorum strain FDAARGOS_884]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCAATTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTATACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGTAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTACCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCTAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCACGACTTAGGTTTTGGTCCGAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGTGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGAATTCAATTTAATGATGATGAACGTCTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGC
CATACATATTTACCTACAAATAATGTTATGGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGATTGATGC
ACAACAACTTATGAATGTATTGCAAGATTTAGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAGAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGCTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCTGTTGTGCTTGCG
GCACCTACCGGCAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATTTTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAATTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCACGTGTCAATTTAACTGAAGT
ATACCGCCAACAAGACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGCGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTAGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATTT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATAG
TCAAGCAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAGCAGTCGCTTATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACACGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATTAGTAAAACAATTGATGCAGATATCATTTTGA
CTGAAGATAATATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATATGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.125

100

0.501