Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I6G50_RS07630 Genome accession   NZ_CP065691
Coordinates   1521933..1522868 (-) Length   311 a.a.
NCBI ID   WP_197908414.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516933..1527868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS07605 (I6G50_07600) - 1516962..1517822 (-) 861 WP_197908412.1 S1 RNA-binding domain-containing protein -
  I6G50_RS07610 (I6G50_07605) frr 1517936..1518493 (-) 558 WP_003134779.1 ribosome recycling factor -
  I6G50_RS07615 (I6G50_07610) pyrH 1518526..1519242 (-) 717 WP_003134781.1 UMP kinase -
  I6G50_RS07620 (I6G50_07615) - 1519333..1520526 (-) 1194 WP_003134782.1 acetate kinase -
  I6G50_RS07625 (I6G50_07620) - 1520655..1521848 (-) 1194 WP_197908413.1 acetate kinase -
  I6G50_RS07630 (I6G50_07625) comYH 1521933..1522868 (-) 936 WP_197908414.1 class I SAM-dependent methyltransferase Machinery gene
  I6G50_RS07635 (I6G50_07630) - 1522913..1523143 (-) 231 WP_003134788.1 DUF3165 family protein -
  I6G50_RS07640 (I6G50_07635) typA 1523220..1525061 (-) 1842 WP_197908415.1 translational GTPase TypA -
  I6G50_RS07645 (I6G50_07640) - 1525379..1525591 (+) 213 WP_003134791.1 YqgQ family protein -
  I6G50_RS07650 (I6G50_07645) - 1525584..1526552 (+) 969 WP_003134793.1 ROK family glucokinase -
  I6G50_RS07655 (I6G50_07650) - 1526569..1526949 (+) 381 WP_003134794.1 rhodanese-like domain-containing protein -
  I6G50_RS07660 (I6G50_07655) - 1526982..1527428 (-) 447 WP_003134795.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34891.84 Da        Isoelectric Point: 4.5476

>NTDB_id=513018 I6G50_RS07630 WP_197908414.1 1521933..1522868(-) (comYH) [Lactococcus garvieae strain FDAARGOS_893]
MDIEKIEKAFGLVLDNIMAIQAELMTDFYDAFVEQNAAYLGALEFAEITKENNDKVRAMNLSKGEWQKLFQFVLLQGSRI
APMQANHNLTPDSIGFIFNFIIEDLHKDHKVRVLEFGSGTGNLAETLLVHMQKELDYVGFEVDDLLLDLSASMSEVMGTD
ASFTQIDAVKPQALEAVDVVISDLPVGYYPDDETASHFQVHDKSEHTYVHHLMIEQSFKYLKETGFALFLAPDNLLTSAQ
SELLKNWIKDNAHVAAVVTLPSSLFKGAGKSIYLLSKKQSNTPTFVYPLADLADRALLQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=513018 I6G50_RS07630 WP_197908414.1 1521933..1522868(-) (comYH) [Lactococcus garvieae strain FDAARGOS_893]
ATGGATATAGAAAAAATCGAAAAAGCTTTTGGACTCGTACTTGATAATATCATGGCAATCCAAGCAGAACTTATGACGGA
TTTTTACGATGCTTTTGTGGAACAAAATGCCGCCTATCTCGGTGCTCTGGAATTTGCTGAAATTACAAAAGAAAATAATG
ATAAAGTGCGTGCGATGAACTTAAGCAAAGGCGAATGGCAAAAACTCTTCCAATTTGTTTTGCTTCAAGGCTCACGTATA
GCACCGATGCAAGCAAATCATAATCTCACACCTGATTCTATTGGTTTTATCTTTAATTTTATTATTGAAGATCTCCACAA
AGATCATAAAGTTCGTGTTTTAGAGTTTGGTTCAGGCACGGGAAATCTAGCAGAGACTCTTCTGGTTCATATGCAAAAAG
AGTTGGACTATGTTGGTTTTGAAGTGGATGACTTATTACTGGATCTTTCTGCCTCAATGTCAGAAGTGATGGGTACGGAT
GCGAGCTTCACACAAATAGATGCTGTGAAACCCCAAGCCCTAGAAGCTGTGGATGTGGTAATCAGTGATTTGCCTGTGGG
ATATTATCCTGATGACGAAACAGCCAGTCATTTTCAAGTGCACGATAAGTCAGAACACACCTATGTACATCACTTGATGA
TCGAACAATCTTTCAAGTATCTTAAAGAGACAGGGTTTGCTCTCTTCCTCGCCCCAGATAACCTTTTAACGAGTGCCCAA
TCAGAACTTTTGAAGAATTGGATAAAAGACAATGCTCATGTGGCAGCAGTTGTTACATTGCCGTCTTCTCTATTTAAAGG
GGCTGGGAAGTCAATTTATTTGTTAAGTAAAAAACAAAGTAATACACCTACATTTGTCTACCCACTCGCTGATTTAGCCG
ACCGTGCTCTTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTGAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(168-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

50.968

99.678

0.508
  comYH Streptococcus mutans UA159

50.645

99.678

0.505