Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6G60_RS13850 Genome accession   NZ_CP065681
Coordinates   2978900..2980756 (-) Length   618 a.a.
NCBI ID   WP_003478776.1    Uniprot ID   A0AAW4IYN4
Organism   Clostridium perfringens strain FDAARGOS_903     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973900..2985756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G60_RS13835 (I6G60_13835) - 2974877..2975875 (-) 999 WP_003455390.1 2-hydroxyacid dehydrogenase -
  I6G60_RS13840 (I6G60_13840) - 2976201..2977250 (-) 1050 WP_003449992.1 AEC family transporter -
  I6G60_RS13845 (I6G60_13845) - 2977505..2978386 (-) 882 WP_197925429.1 hypothetical protein -
  I6G60_RS13850 (I6G60_13850) rcrQ 2978900..2980756 (-) 1857 WP_003478776.1 ABC transporter ATP-binding protein Regulator
  I6G60_RS13855 (I6G60_13855) - 2980749..2983046 (-) 2298 WP_197925431.1 ABC transporter ATP-binding protein -
  I6G60_RS13860 (I6G60_13860) - 2983371..2983817 (+) 447 WP_003461042.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G60_RS13865 (I6G60_13865) - 2983951..2984745 (-) 795 WP_197925433.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68494.18 Da        Isoelectric Point: 5.9536

>NTDB_id=512928 I6G60_RS13850 WP_003478776.1 2978900..2980756(-) (rcrQ) [Clostridium perfringens strain FDAARGOS_903]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPISQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPEGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=512928 I6G60_RS13850 WP_003478776.1 2978900..2980756(-) (rcrQ) [Clostridium perfringens strain FDAARGOS_903]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCTTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATAGTTGGACCTAAGATTTTAGGTAAAGCCACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATAACCGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAAGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATATCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCTGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCATTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTTGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAAGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGAAGGATATAATATGGTCTTAAA
CGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGACCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATCCAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(48-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.764

95.307

0.484