Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6G63_RS09995 Genome accession   NZ_CP065674
Coordinates   2066091..2067944 (+) Length   617 a.a.
NCBI ID   WP_003537635.1    Uniprot ID   B0N5N8
Organism   Thomasclavelia ramosa strain FDAARGOS_906     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2061091..2072944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G63_RS09975 (I6G63_09975) - 2061379..2062185 (+) 807 WP_003537630.1 endonuclease/exonuclease/phosphatase family protein -
  I6G63_RS09980 (I6G63_09980) - 2062277..2062696 (+) 420 WP_003537631.1 C-GCAxxG-C-C family protein -
  I6G63_RS09985 (I6G63_09985) - 2063418..2063870 (+) 453 WP_003537632.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G63_RS09990 (I6G63_09990) - 2063870..2066098 (+) 2229 WP_008791655.1 ABC transporter ATP-binding protein -
  I6G63_RS09995 (I6G63_09995) rcrQ 2066091..2067944 (+) 1854 WP_003537635.1 ABC transporter ATP-binding protein Regulator
  I6G63_RS10000 (I6G63_10000) - 2068022..2069344 (+) 1323 WP_366250547.1 replication-associated recombination protein A -
  I6G63_RS10005 (I6G63_10005) - 2069354..2069728 (+) 375 WP_003537644.1 DUF3795 domain-containing protein -
  I6G63_RS10010 (I6G63_10010) - 2069793..2070632 (+) 840 WP_029480110.1 DUF368 domain-containing protein -
  I6G63_RS15985 - 2071120..2071275 (+) 156 WP_003537648.1 DUF6323 family protein -
  I6G63_RS10015 (I6G63_10015) - 2071516..2072586 (+) 1071 WP_003537650.1 competence/damage-inducible protein A -
  I6G63_RS10020 (I6G63_10020) - 2072596..2072847 (+) 252 WP_003537653.1 hypothetical protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67852.03 Da        Isoelectric Point: 5.2739

>NTDB_id=512870 I6G63_RS09995 WP_003537635.1 2066091..2067944(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_906]
MSNQPKRNGPKFGPGGMHGMRGGEKAKDFKGTLGKLFKYLRPYYFRLVIVVIFASASTVFAIVGPKILAKATDKLSEGIM
AKVAGTGGIDFDYIGQIILILVGLYLISALFSYIQGFITSTISQRVAYDLRTSISQKMDRMPLSYFDKHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSTVTVIGIFIMMLTISPVMTLIAVCVLPVSMVLIGLVMKRSQKYFARQQAALGDVNGHIEEM
YGGHNVVKAFNGEAASVEQFNEYNDNLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGVLAGGGSITIGDIQAFIQY
VRQFNQPITQLAQTMNMLQSTAAAAERVFEFLGEEELEPETPKVTADEVAKVEGSVTFADVNFGYLKDQTIINDFSLHVH
AGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSILIDGKDIRDFGRQDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDE
EVKEACKVAYVDHFVQTLENGYETMINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHDSLLAKDGFYASLYRSQFEGSDE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=512870 I6G63_RS09995 WP_003537635.1 2066091..2067944(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_906]
ATGAGTAATCAACCAAAAAGAAATGGTCCTAAATTCGGACCTGGTGGTATGCACGGAATGCGTGGCGGTGAAAAAGCTAA
AGATTTTAAAGGTACTTTAGGTAAATTATTTAAATATTTAAGACCGTATTATTTTCGTTTAGTTATAGTTGTGATTTTTG
CTTCAGCATCAACGGTTTTTGCAATCGTAGGACCAAAGATTTTAGCTAAAGCAACAGATAAATTAAGTGAAGGTATCATG
GCTAAAGTAGCTGGTACTGGTGGAATTGATTTTGATTATATTGGTCAAATTATTTTGATTTTAGTTGGATTGTATTTGAT
TAGTGCTTTATTTAGTTATATACAAGGTTTTATTACTTCAACTATTTCACAACGAGTTGCTTATGATTTAAGAACATCAA
TTTCTCAAAAGATGGATCGGATGCCATTAAGTTATTTTGATAAACATACTAGTGGTGATATTTTAAGCCGAGTAACAAAT
GATATCGATACAATCGCACAATCACTAAATCAAAGTATGTCACAGGTAATTACGTCGACAGTAACGGTAATTGGAATCTT
TATCATGATGTTGACTATTTCACCAGTTATGACTTTGATCGCAGTTTGCGTATTACCAGTATCAATGGTTTTGATTGGTT
TAGTAATGAAACGTTCACAAAAATATTTTGCGCGTCAACAAGCTGCTTTAGGTGATGTCAATGGTCATATTGAAGAAATG
TATGGTGGTCATAATGTGGTTAAAGCATTTAATGGTGAAGCTGCTTCAGTAGAACAATTTAATGAGTATAATGATAATTT
ATATGAAAGTGCTTGGAAGTCACAATTCTTTTCGGGTTTGATGCAGCCAATCACAGGATTTGTTGGAAATGTTGGATACG
TTGCGGTATGTTTATTAGGTGGTGTTCTTGCTGGTGGTGGTAGTATCACAATTGGTGATATTCAGGCCTTTATTCAATAT
GTAAGACAATTTAATCAACCAATAACACAATTAGCACAGACAATGAATATGTTACAAAGTACAGCAGCAGCGGCTGAACG
TGTTTTTGAATTTTTAGGTGAAGAAGAATTAGAACCAGAAACACCAAAAGTTACTGCTGATGAGGTGGCTAAAGTTGAAG
GTTCTGTTACCTTTGCTGATGTTAATTTTGGGTATTTAAAAGATCAAACGATTATTAATGATTTTAGTTTACATGTTCAT
GCGGGGCAAACTGTTGCAATTGTAGGACCGACTGGTGCTGGAAAAACAACGATCGTAAAATTATTAATGCGATTCTATGA
ATTAAATAGTGGTTCGATTCTTATTGATGGTAAAGATATTCGTGATTTTGGACGTCAGGATTTACGATCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTGTTTAATGGAACAATTAAGGAAAACCTAATGTATGGAAAATTAGATGCAAGTGATGAA
GAAGTCAAGGAGGCTTGTAAAGTCGCTTATGTTGATCATTTTGTACAAACATTAGAGAATGGATATGAAACAATGATCAA
TGAGGAATCATCTAACATTTCTCAAGGGCAAAAACAACTTTTAACAATTGCACGTGCTTTCTTAAAAGATCCAAAAATTT
TGATTCTTGATGAAGCAACTTCTTCAGTAGATACAAGAACAGAAGTATTAATTCAAAAAGGAATGGAAAAGCTAATGGAG
GGAAGAACAAGTTTTGTCATTGCCCATCGTTTATCAACAATTCGTGATGCTGACACAATTATTGTAATGAAAGATGGTGA
CATTGTAGAACTTGGAAATCATGATTCATTATTGGCTAAAGATGGCTTCTATGCCTCATTGTATCGTTCTCAATTCGAGG
GATCAGATGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.489

0.494