Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6G63_RS01905 Genome accession   NZ_CP065674
Coordinates   373637..375457 (-) Length   606 a.a.
NCBI ID   WP_003535236.1    Uniprot ID   B0N1M1
Organism   Thomasclavelia ramosa strain FDAARGOS_906     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 368637..380457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G63_RS01885 (I6G63_01885) - 369816..370481 (-) 666 WP_003535232.1 DUF5680 domain-containing protein -
  I6G63_RS01890 (I6G63_01890) - 370632..371600 (+) 969 WP_003535233.1 P1 family peptidase -
  I6G63_RS01895 (I6G63_01895) - 371769..372389 (+) 621 WP_003535234.1 ECF transporter S component -
  I6G63_RS01900 (I6G63_01900) - 372663..373511 (+) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  I6G63_RS01905 (I6G63_01905) rcrQ 373637..375457 (-) 1821 WP_003535236.1 ABC transporter ATP-binding protein Regulator
  I6G63_RS01910 (I6G63_01910) rcrP 375457..377214 (-) 1758 WP_003535237.1 ABC transporter ATP-binding protein Regulator
  I6G63_RS01915 (I6G63_01915) - 377324..378379 (-) 1056 WP_003535238.1 sensor histidine kinase -
  I6G63_RS01920 (I6G63_01920) - 378366..379046 (-) 681 WP_003535239.1 response regulator transcription factor -
  I6G63_RS01925 (I6G63_01925) - 379214..379597 (-) 384 WP_003535240.1 DUF956 family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 67651.45 Da        Isoelectric Point: 8.5081

>NTDB_id=512863 I6G63_RS01905 WP_003535236.1 373637..375457(-) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_906]
MAEGKYLEKNDLKAPGVNMGSKEKSKDFKETWLKLLKYCRKYWIVMVMAIISAIFGTILTLIGPDRLSELTDLITNGIMT
GIDMTRIGKIGLTLVGFYVTSAFFSLFQGFVMTTVTQWVTKNLRRDISRKINRLPISFYNHTSTGDILSRVTNDIDMIGQ
SLNQSVGTLVSSVTLLAGSLIMMLKTNLIMTFTAVLATVIGFALMLVIMSKSQKYFARQQKHLGEINGYVEEIYTGHTIV
KAYNGEVKAKEAFTRQNNNLRNSGFKAQCLSGLMMPIMSFIGNFGYVAVCIIGAALAMSGDISFGVIVAFMMYIRYFTQP
LSQLAQAAQSLQSAAAAGERVFEFLEAQEMADESHKVKRLSKAKGGVEFRHVHFGYDSNKIIINDFSARAEPGQKIAIVG
PTGAGKTTIINLLMRFYEVDRGEIRIDNIPTKDLRREDVHGQFCMVLQDTWLFEGTVRENLVYNTKNISNQIIEEACKAV
GLDHFIRTLPYGYDTVLNDQVNLSQGQKQQLTIARAMIADKPMLILDEATSSVDTRTELQIQKAMDELMEGRTSFVIAHR
LSTIKNADLILVMKDGDIIESGNHEDLLSRGGFYAELYNSQFDKAV

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=512863 I6G63_RS01905 WP_003535236.1 373637..375457(-) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_906]
ATGGCAGAAGGAAAGTATTTAGAGAAAAATGATTTAAAAGCTCCTGGGGTTAATATGGGTAGTAAAGAAAAATCTAAAGA
TTTTAAGGAAACATGGTTAAAATTGTTAAAATATTGTAGAAAGTATTGGATTGTAATGGTTATGGCAATTATCAGTGCCA
TATTTGGAACAATATTAACCTTGATAGGTCCAGACAGATTATCAGAATTAACAGATTTAATTACAAATGGAATAATGACG
GGAATTGATATGACAAGGATTGGTAAAATTGGTCTTACATTAGTCGGATTTTATGTTACTAGTGCTTTTTTTTCTTTATT
TCAGGGATTTGTCATGACAACAGTAACTCAGTGGGTTACTAAAAATTTAAGAAGAGATATTTCGCGTAAAATTAATCGCT
TGCCAATTAGTTTTTATAATCATACTTCAACTGGTGATATATTATCGAGAGTTACCAACGATATTGATATGATTGGACAA
TCATTAAATCAGAGTGTTGGAACATTAGTTTCATCAGTCACTTTATTAGCTGGTTCACTTATAATGATGTTAAAAACTAA
TCTCATTATGACTTTTACTGCAGTTCTAGCAACGGTTATAGGTTTTGCTTTAATGCTGGTAATTATGTCTAAATCGCAAA
AATATTTTGCTCGCCAGCAAAAACATCTTGGTGAAATCAATGGATATGTTGAAGAAATTTATACTGGTCATACGATTGTT
AAGGCTTATAATGGTGAAGTTAAGGCAAAAGAAGCTTTTACAAGACAGAATAATAATTTACGTAATAGTGGTTTTAAGGC
CCAATGCTTATCTGGATTAATGATGCCAATCATGAGTTTTATTGGTAACTTTGGATACGTAGCAGTATGCATTATTGGCG
CTGCATTAGCAATGAGTGGAGATATATCATTTGGAGTAATTGTAGCATTTATGATGTATATTAGATATTTTACTCAGCCA
TTATCACAGTTAGCTCAAGCAGCTCAATCATTACAGTCAGCGGCTGCAGCAGGAGAGCGTGTATTTGAATTTTTAGAAGC
TCAAGAAATGGCTGATGAGAGTCATAAAGTAAAACGCTTGTCCAAAGCCAAAGGTGGAGTAGAATTTAGACATGTTCATT
TTGGTTATGATAGCAATAAGATTATTATTAATGATTTTTCTGCTCGTGCTGAACCTGGTCAAAAGATTGCTATTGTTGGG
CCAACTGGAGCTGGTAAAACAACGATAATCAACTTATTGATGCGTTTTTACGAAGTTGATCGTGGCGAAATTAGAATTGA
TAATATTCCAACTAAAGATTTACGTCGAGAAGATGTCCACGGACAATTCTGTATGGTTCTTCAAGATACGTGGCTTTTTG
AAGGAACAGTGCGTGAGAATTTGGTTTATAATACTAAAAATATATCTAATCAGATAATTGAAGAAGCATGTAAAGCAGTA
GGCTTAGATCATTTTATCAGAACACTTCCATATGGTTATGATACGGTACTTAATGATCAAGTAAATTTATCACAAGGACA
AAAACAACAGTTGACGATTGCTCGAGCGATGATTGCTGATAAACCAATGTTGATTCTTGATGAAGCTACTAGTTCAGTAG
ATACTAGAACAGAGTTACAGATTCAAAAGGCCATGGATGAATTAATGGAGGGACGAACTTCCTTTGTTATTGCGCATCGT
CTTTCAACAATTAAAAACGCAGATTTAATTCTAGTAATGAAAGATGGTGATATTATTGAAAGTGGAAATCATGAAGATTT
ATTAAGTCGTGGTGGTTTCTATGCAGAGCTTTATAATAGTCAGTTTGATAAAGCTGTATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-321)

ABC transporter (ABC_tran)

(384-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.894

94.554

0.538