Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6G75_RS08860 Genome accession   NZ_CP065650
Coordinates   1595221..1596000 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain FDAARGOS_918     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590221..1601000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G75_RS08835 (I6G75_08835) uppS 1590966..1591742 (-) 777 WP_000971301.1 isoprenyl transferase -
  I6G75_RS08840 (I6G75_08840) frr 1591828..1592385 (-) 558 WP_000531503.1 ribosome recycling factor -
  I6G75_RS08845 (I6G75_08845) pyrH 1592388..1593110 (-) 723 WP_000042663.1 UMP kinase -
  I6G75_RS08850 (I6G75_08850) tsf 1593177..1594064 (-) 888 WP_001018581.1 translation elongation factor Ts -
  I6G75_RS08855 (I6G75_08855) rpsB 1594168..1594869 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  I6G75_RS08860 (I6G75_08860) codY 1595221..1596000 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6G75_RS08865 (I6G75_08865) hslU 1596078..1597469 (-) 1392 WP_000550082.1 ATP-dependent protease ATPase subunit HslU -
  I6G75_RS08870 (I6G75_08870) hslV 1597492..1598034 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  I6G75_RS08875 (I6G75_08875) xerC 1598077..1598976 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  I6G75_RS08880 (I6G75_08880) trmFO 1599042..1600346 (-) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=512576 I6G75_RS08860 WP_000421288.1 1595221..1596000(-) (codY) [Bacillus cereus strain FDAARGOS_918]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=512576 I6G75_RS08860 WP_000421288.1 1595221..1596000(-) (codY) [Bacillus cereus strain FDAARGOS_918]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAGATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCACTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATCGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459