Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I6G80_RS11230 Genome accession   NZ_CP065647
Coordinates   2102009..2104357 (+) Length   782 a.a.
NCBI ID   WP_017474366.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2097009..2109357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS11210 (I6G80_11210) spoVB 2097261..2098814 (-) 1554 WP_009327771.1 stage V sporulation protein B -
  I6G80_RS11215 (I6G80_11215) - 2098932..2099228 (+) 297 WP_003183971.1 post-transcriptional regulator -
  I6G80_RS11220 (I6G80_11220) secDF 2099265..2101490 (+) 2226 WP_003183969.1 protein translocase subunit SecDF -
  I6G80_RS11225 (I6G80_11225) - 2101644..2101937 (+) 294 WP_017474367.1 lipopolysaccharide assembly LapA domain-containing protein -
  I6G80_RS11230 (I6G80_11230) recJ 2102009..2104357 (+) 2349 WP_017474366.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I6G80_RS11235 (I6G80_11235) - 2104375..2104887 (+) 513 WP_003183964.1 adenine phosphoribosyltransferase -
  I6G80_RS11240 (I6G80_11240) - 2105058..2107259 (+) 2202 WP_003183962.1 RelA/SpoT family protein -
  I6G80_RS11245 (I6G80_11245) dtd 2107273..2107716 (+) 444 WP_003183959.1 D-aminoacyl-tRNA deacylase -
  I6G80_RS11250 (I6G80_11250) - 2107744..2109327 (-) 1584 WP_003183955.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87604.26 Da        Isoelectric Point: 4.9831

>NTDB_id=512531 I6G80_RS11230 WP_017474366.1 2102009..2104357(+) (recJ) [Bacillus licheniformis strain FDAARGOS_923]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDPYLLKDMEKAVRRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDEREAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
PKPFVLVSDVKIDDAKKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILKLDPAKRACICFRGETKAKLAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDI
FDHVINGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=512531 I6G80_RS11230 WP_017474366.1 2102009..2104357(+) (recJ) [Bacillus licheniformis strain FDAARGOS_923]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGGTTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTATATGGCAATG
ATGCACGTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGTCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATTACAGTTGACACAGGCATTGCCGGCGTTCATGAAGCTGAAGTCGCTAAAGAGCTC
GGCATCGACCTGATCATTACGGATCACCATGAGCCGGGTCCCGTTTTGCCGGATGCTTATGCGATCATTCATCCGAAACA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGC
TTCCGGAAGATTTGCTCGACCTTTGTGCGATCGGTACGATTGCCGATCTTGTGCCGCTTCATGATGAAAACAGGCAGATA
GCCAAGCGCGGCATGGAACAGTTCAGGAAAACGAAGCGTCCAGGATTAAAAGCGCTGGCGAAAATTGCCGGAGCGGAGAT
ACATAACGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAGAAGACGAAAGAGAAGCGGAAGAGCTTGCTGAGGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCTGTGATCGT
CGTAGCGCGGCCGGGCTGGAATCCTGGCGTCGTGGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTTACAGGCCCGCCA
TCGTCCTTGGCGTCGATGAAGAAAAAGGAATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAC
CTTTCCGAGTGCCGGGATATTCTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGACGT
TTCGGCTCTGAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGCAGATTTTATCCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATATCGGTTGACAGCATTGCCGAAATGAACTTGCTGGCGCCGTTCGGCACGGGAAAC
CCGAAGCCGTTCGTTCTTGTCAGCGACGTAAAAATTGATGACGCCAAAAAAATCGGCGCCAACAAGAATCATTTGAAGCT
TGTGCTTGCAGACGACGGGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGATATCGAAGAAGGAATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGAAGCTGGACCCTGCGAA
ACGGGCGTGCATCTGCTTCCGCGGGGAAACAAAAGCAAAGCTGGCAGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGATGCAGAGCGGCTCGACCTTGAGAGCCGTTATGCGGTATTTATAGATATTCCGCAGTCGCTCGACATC
TTTGATCATGTAATAAACGGCAAAAAGCTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAAC
ATTCCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATTTAACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAAAGCCGGCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-436)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

68.374

99.872

0.683