Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6G82_RS04230 Genome accession   NZ_CP065643
Coordinates   806126..808558 (+) Length   810 a.a.
NCBI ID   WP_053996250.1    Uniprot ID   A0A0M9DIF4
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 801126..813558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS04205 (I6G82_04180) - 801508..802167 (+) 660 WP_053996255.1 tetratricopeptide repeat protein -
  I6G82_RS04210 (I6G82_04185) - 802357..803799 (+) 1443 WP_053996254.1 DHA2 family efflux MFS transporter permease subunit -
  I6G82_RS04215 (I6G82_04190) - 803894..804613 (-) 720 WP_053996253.1 GTP pyrophosphokinase -
  I6G82_RS04220 (I6G82_04195) - 804806..805093 (-) 288 WP_053996252.1 hypothetical protein -
  I6G82_RS04225 (I6G82_04200) hisA 805090..805857 (-) 768 WP_053996251.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  I6G82_RS04230 (I6G82_04205) recD2 806126..808558 (+) 2433 WP_053996250.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6G82_RS04235 (I6G82_04210) hpaB 808689..810122 (+) 1434 WP_053996249.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  I6G82_RS04240 (I6G82_04215) alaS 810487..813147 (+) 2661 WP_053996248.1 alanine--tRNA ligase -
  I6G82_RS04245 (I6G82_04220) - 813236..813502 (+) 267 WP_004226839.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90716.97 Da        Isoelectric Point: 4.8518

>NTDB_id=512470 I6G82_RS04230 WP_053996250.1 806126..808558(+) (recD2) [Lysinibacillus macroides strain FDAARGOS_925]
MTDQFDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGNLKQHPKYGVQ
FQIETFAKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDIVPRLSADKKETIRSTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLMENPYRLIEDIEGIGFFRADELGAKLGMTGNHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKDMLEQSQQQEIPFEAISQACIELREESKICGEETRLYLPSLYFSEVGIASKIVTLIERNRKA
EHFSKDEIRKAIGETEERLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGIVEVYAQLHGLSLNPKEYAQKEQP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVLV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPNNLTMKTTDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDTTYRIKDKVLQLVNQPESNVFNGDMG
EVVSIIKAKETIEKQDLLVVSFDGIEVTYQRGDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEAEVLADGLQRTDDLQRFTSLRARLNPMEVAEELVEVEAVSIADGDRQESISSDYKLTVETAPTIHPLIGME
HVSPYDFLED

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=512470 I6G82_RS04230 WP_053996250.1 806126..808558(+) (recD2) [Lysinibacillus macroides strain FDAARGOS_925]
ATGACAGACCAATTCGATTTATTTGAGCTTAATAAGTTTTTTATACTCGGACGTCCAATTGTTTCCATCTTTCATAATGC
ACAAAATATGTATTCCATTGTGCGTGTGAAAATTCAAGAAACAAATTTGCAATATGAAGATAAAGAAATAATTGTTGTTG
GTTATTTTCCACCACTACAAATGGATGAGCAATACCGTTTTACAGGTAACTTAAAGCAGCATCCAAAGTATGGTGTGCAA
TTTCAAATTGAAACATTTGCGAAGGAAGTACCAGCAACTGAACAAGGAATTATTCATTATTTATCGAGCGATTTATTTGT
GGGGATTGGTAAAAAAACAGCCGAAACGATTGTTGAGAAGCTTGGTGCGAATGCATTGAGGCTGATTTTGGAGGACCCTA
GTGCATTAGATATTGTACCGCGCCTATCAGCAGATAAAAAAGAGACTATTCGTAGCACCATCGAACAAAATCTCGGCTTA
GAGCGTGTAATGATTCAGCTGAATGAGTGGGGGTTTGGCCCACAGCTTGGTATGAAAATTTATCAAACCTATCGTACAGA
GGCAATAGAGCTACTAATGGAAAATCCATATCGCCTTATTGAGGATATTGAAGGGATTGGCTTCTTTCGAGCAGATGAGC
TGGGCGCGAAATTAGGGATGACAGGCAATCATCCTGACCGTGTTAAGGCAGCTATTTTGCATATATTAAATACAGCGGCT
TTATCGGATGGTCATGTTTATTTGGATGCAGAACATGTTTTACCACTTGTCAAGGATATGCTGGAGCAAAGTCAACAGCA
GGAAATTCCGTTTGAGGCTATTTCACAGGCATGTATAGAGCTACGAGAAGAAAGCAAGATTTGTGGGGAGGAAACAAGGT
TGTATTTGCCCTCTCTGTATTTTTCAGAGGTAGGGATTGCCTCCAAAATAGTGACCCTTATTGAACGGAATCGAAAGGCA
GAGCATTTTAGTAAGGATGAAATTCGCAAAGCAATTGGTGAAACAGAGGAGCGACTGAATGTCACCTATGCAGAGACACA
GGCGAATGCCATTGAGCAGGCTCTAAATTCAGCGGTAATGATTTTAACAGGTGGACCTGGTACTGGGAAAACAACGGTTG
TACGTGGGATTGTTGAAGTCTATGCACAGCTTCATGGGTTATCATTAAATCCAAAGGAATATGCTCAAAAAGAACAGCCT
TTTCCTATTATTCTTTGTGCCCCAACAGGACGTGCTGCTAAACGCTTGGCTGAATCAACAGAGCTTCCTGCAATGACCAT
CCATCGTTTACTCGGCTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGAGAGGTGACAGGGAAGCTCATTATTGTGG
ATGAGATGTCAATGGTTGATACCTGGCTTGCCCATCAACTATTAAAGGCTTTACATGAGGATGTACAGGTAGTTTTGGTT
GGCGACCAAGATCAGCTTCCGCCAGTAGGTCCAGGACAGGTTCTTAAGGATTTATTGGCATCAAAACAGCTGCCAACGGT
TGAATTAACAGATGTTTATAGACAAGCAGAAGGTTCAACGATTATCGAACTAGCCCATCAAATAAAAAAAGGAACGATTC
CTAATAATTTAACGATGAAAACAACGGATCGTTCATTTATTAAAGCATCCGCCGATCAAGTAGCAAATGTCGTTACACAG
GTGGTCAAAAGTGCTGTTGCAAAAGGGCAAGAAATTCGCAATATTCAAGTGCTTGCGCCTATGTATAAAGGACCAGCTGG
TATTGACAATTTAAACAAAATGATTCAAGAGCTGATTAACCCTAATGATACAGGTACACGCAAAGAGCTCGTTTTTGGCG
ATACCACTTATCGCATCAAAGACAAAGTGCTACAGCTTGTCAATCAGCCTGAAAGCAATGTTTTTAATGGGGACATGGGG
GAAGTTGTTAGTATTATTAAGGCGAAGGAAACAATCGAAAAGCAGGATTTACTAGTTGTATCCTTCGACGGCATTGAGGT
AACGTACCAGCGTGGTGATCTCAATCAGCTAACCCTTGCCTATTGCTGCTCTATTCATAAGTCACAGGGCTCTGAATTCC
AAACTGTGATTATGCCTGTTGTAAGAGGCTACTCGAAAATGCTACGCCGCAATCTGTTATATACAGGCATTACACGGGCA
AAAAATTTCTTGATTTTATGTGGTGAGGCAGAGGTGCTGGCAGATGGCCTACAGCGTACAGATGATCTTCAACGTTTTAC
CTCCTTACGTGCACGATTAAATCCAATGGAGGTAGCTGAAGAACTAGTAGAAGTAGAGGCAGTTTCTATAGCAGATGGGG
ATCGTCAGGAGTCAATATCCAGTGACTATAAGCTTACCGTAGAAACCGCGCCTACTATTCATCCACTGATTGGGATGGAG
CATGTATCACCTTATGATTTTTTAGAAGACTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9DIF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.662

97.778

0.525