Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MUS_RS08295 Genome accession   NC_017912
Coordinates   1668439..1669218 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis YAU B9601-Y2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663439..1674218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUS_RS08275 (MUS_1767) trmFO 1664126..1665433 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUS_RS08280 (MUS_1768) xerC 1665503..1666420 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MUS_RS08285 (MUS_1769) hslV 1666436..1666981 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  MUS_RS08290 (MUS_1770) hslU 1666998..1668401 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  MUS_RS08295 (MUS_1771) codY 1668439..1669218 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MUS_RS08300 flgB 1669572..1669961 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MUS_RS08305 (MUS_1773) flgC 1669961..1670413 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  MUS_RS08310 (MUS_1774) fliE 1670424..1670744 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  MUS_RS08315 (MUS_1775) fliF 1670787..1672397 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  MUS_RS08320 (MUS_1776) fliG 1672410..1673426 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MUS_RS08325 (MUS_1777) fliH 1673419..1674174 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=51239 MUS_RS08295 WP_003154263.1 1668439..1669218(+) (codY) [Bacillus velezensis YAU B9601-Y2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=51239 MUS_RS08295 WP_003154263.1 1668439..1669218(+) (codY) [Bacillus velezensis YAU B9601-Y2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment