Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6G86_RS01435 Genome accession   NZ_CP065637
Coordinates   232360..233151 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_929     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 227360..238151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G86_RS01415 (I6G86_01415) - 227635..228990 (+) 1356 WP_042218098.1 MATE family efflux transporter -
  I6G86_RS01420 (I6G86_01420) gatB 229003..230436 (-) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  I6G86_RS01425 (I6G86_01425) gatA 230438..231910 (-) 1473 WP_003133636.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  I6G86_RS01430 (I6G86_01430) gatC 231910..232215 (-) 306 WP_003133635.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I6G86_RS01435 (I6G86_01435) codY 232360..233151 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6G86_RS01440 (I6G86_01440) - 233288..234886 (-) 1599 WP_042218100.1 hypothetical protein -
  I6G86_RS01445 (I6G86_01445) - 235026..235349 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  I6G86_RS01450 (I6G86_01450) ruvX 235364..235792 (-) 429 WP_042218102.1 Holliday junction resolvase RuvX -
  I6G86_RS01455 (I6G86_01455) - 235792..236058 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  I6G86_RS01460 (I6G86_01460) - 236259..237170 (-) 912 WP_003133628.1 aldo/keto reductase family oxidoreductase -
  I6G86_RS01465 (I6G86_01465) rpmH 237319..237453 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=512389 I6G86_RS01435 WP_003133634.1 232360..233151(-) (codY) [Lactococcus garvieae strain FDAARGOS_929]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=512389 I6G86_RS01435 WP_003133634.1 232360..233151(-) (codY) [Lactococcus garvieae strain FDAARGOS_929]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGCGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGAACTTACCTCAAAGTTCTTAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483