Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I4W80_RS07910 Genome accession   NZ_CP065591
Coordinates   1557758..1558537 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain 1817     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552758..1563537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS07890 (I4W80_07890) trmFO 1553462..1554766 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I4W80_RS07895 (I4W80_07895) xerC 1554829..1555746 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  I4W80_RS07900 (I4W80_07900) hslV 1555761..1556306 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  I4W80_RS07905 (I4W80_07905) hslU 1556323..1557723 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  I4W80_RS07910 (I4W80_07910) codY 1557758..1558537 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I4W80_RS07915 (I4W80_07915) flgB 1558826..1559215 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  I4W80_RS07920 (I4W80_07920) flgC 1559215..1559667 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  I4W80_RS07925 (I4W80_07925) fliE 1559679..1559996 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  I4W80_RS07930 (I4W80_07930) fliF 1560047..1561639 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  I4W80_RS07935 (I4W80_07935) fliG 1561651..1562667 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  I4W80_RS07940 (I4W80_07940) fliH 1562660..1563424 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=512116 I4W80_RS07910 WP_007499612.1 1557758..1558537(+) (codY) [Bacillus altitudinis strain 1817]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=512116 I4W80_RS07910 WP_007499612.1 1557758..1558537(+) (codY) [Bacillus altitudinis strain 1817]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471