Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H5J24_RS02675 Genome accession   NZ_CP065589
Coordinates   591058..591714 (-) Length   218 a.a.
NCBI ID   WP_068944510.1    Uniprot ID   -
Organism   Chryseobacterium capnotolerans isolate DH-B6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 586058..596714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J24_RS02650 - 587047..587451 (-) 405 WP_232816008.1 hypothetical protein -
  H5J24_RS02660 (H5J24_02580) der 588128..589438 (+) 1311 WP_068944513.1 ribosome biogenesis GTPase Der -
  H5J24_RS02665 (H5J24_02585) upp 589591..590241 (+) 651 WP_068944512.1 uracil phosphoribosyltransferase -
  H5J24_RS02670 (H5J24_02590) - 590246..590932 (-) 687 WP_068944511.1 alpha/beta hydrolase -
  H5J24_RS02675 (H5J24_02595) comF 591058..591714 (-) 657 WP_068944510.1 double zinc ribbon domain-containing protein Machinery gene
  H5J24_RS02680 (H5J24_02600) - 591788..593260 (-) 1473 WP_068944509.1 helix-turn-helix transcriptional regulator -
  H5J24_RS02685 (H5J24_02605) aceB 593387..594961 (+) 1575 WP_068944508.1 malate synthase A -
  H5J24_RS02690 (H5J24_02610) aceA 595078..596361 (+) 1284 WP_346729984.1 isocitrate lyase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25778.77 Da        Isoelectric Point: 8.0719

>NTDB_id=512077 H5J24_RS02675 WP_068944510.1 591058..591714(-) (comF) [Chryseobacterium capnotolerans isolate DH-B6]
MILDLFFPNRCLHCNRIIESDLLICDLCFNQIHFTHYNYFENNPVKEKCKLLFPVENTYALIQFEEESLSRKIIHELKYR
SREITGKILANWTTERLDFKDQKPDLLISVPLHPKKLRERGYNQLHLFTETLSKYYEIPFDHQLIKRNYYSKAQALKDKQ
HRLETRNTFSVTRTITGKHILIIDDVFTTGTTVSSIAWEILNAGDHNKVSVLVMAMDV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=512077 H5J24_RS02675 WP_068944510.1 591058..591714(-) (comF) [Chryseobacterium capnotolerans isolate DH-B6]
ATGATATTGGACTTATTCTTTCCTAACCGATGCCTCCATTGTAATAGAATTATTGAGAGTGATCTTCTGATTTGTGATCT
ATGTTTTAATCAAATTCATTTTACACATTACAATTATTTCGAAAATAACCCGGTAAAAGAAAAGTGCAAACTTCTTTTTC
CTGTTGAAAACACCTATGCTCTCATACAGTTTGAGGAAGAAAGTCTAAGCCGGAAAATCATTCATGAACTGAAATACAGA
AGCCGGGAAATTACCGGAAAAATTCTGGCCAATTGGACTACTGAGCGATTGGATTTTAAAGATCAAAAACCGGATCTCCT
GATAAGTGTTCCTCTGCATCCTAAAAAGCTCAGAGAAAGAGGCTATAATCAGCTTCATCTTTTCACAGAAACGCTTTCAA
AATATTACGAAATCCCATTTGACCATCAATTAATCAAAAGAAATTACTATTCTAAAGCACAAGCGTTAAAGGATAAGCAG
CATCGGCTGGAAACCAGGAATACTTTTTCAGTAACCCGGACTATAACAGGAAAACATATTCTAATCATTGACGATGTTTT
CACCACAGGAACTACTGTTTCTTCAATTGCATGGGAGATTTTAAATGCCGGTGATCATAATAAAGTCAGTGTATTGGTTA
TGGCAATGGATGTATAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.995

99.541

0.528