Detailed information NTG0051183

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: M892_RS04215
• Genome accession: NC_022269
• Coordinates: 911019..912374 (-)
• Length: 451 a.a.
• NCBI ID: WP_012127604.1
• Uniprot ID: -
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 906019..917374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M892_RS04185 (M892_04145)	-	906730..906996 (-)	267	WP_012127608.1	DksA/TraR family C4-type zinc finger protein	-
M892_RS04190 (M892_04150)	-	907134..907574 (-)	441	WP_012127607.1	hypothetical protein	-
M892_RS04195 (M892_04155)	-	907568..908299 (-)	732	WP_012127606.1	ATPase	-
M892_RS28170	-	908489..909524 (+)	1036	WP_162471673.1	IS630 family transposase	-
M892_RS04210 (M892_04170)	serS	909620..910926 (-)	1307	Protein_837	serine--tRNA ligase	-
M892_RS04215 (M892_04175)	rarA	911019..912374 (-)	1356	WP_012127604.1	replication-associated recombination protein A	Machinery gene
M892_RS04220 (M892_04180)	lolA	912375..913001 (-)	627	WP_012127603.1	outer membrane lipoprotein chaperone LolA	-
M892_RS04225 (M892_04185)	-	913063..916425 (-)	3363	WP_021017811.1	DNA translocase FtsK	-
M892_RS04230 (M892_04190)	lrp	916578..917072 (-)	495	WP_005528862.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 50030.52 Da
• Isoelectric Point: 5.6627

>NTDB_id=51183 M892_RS04215 WP_012127604.1 911019..912374(-) (rarA) [Vibrio campbellii ATCC BAA-1116]
MVVSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAE
VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRA
RVYKLTSLDKDEISLALNQAISDKERGLGNTPAHFVDNVLDRLAELVNGDARMSLNYLELLYDMAEDNAKGEKEITLKLL
AEVAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSA
WDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPG
AYAAGEQYLPPEMGDRRYYQPTNRGLETKIGEKLDYLATLDANSPQKRYEK

Nucleotide

• Length: 1356 bp

>NTDB_id=51183 M892_RS04215 WP_012127604.1 911019..912374(-) (rarA) [Vibrio campbellii ATCC BAA-1116]
TTGGTAGTGAGCAATTACACATTAGATTTCTCGGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAAC
GATTGAACAGTACATCGGTCAGCAGCATATTTTAGGTCCTGGTAAGCCACTACGCCGTGCGTTAGAGGCGGGTCATATTC
ACTCTATGATCCTTTGGGGACCGCCAGGCACAGGTAAGACGACGTTGGCAGAAGTGGCGGCAAACTATGCCAATGCAGAA
GTTGAGCGTGTGTCTGCGGTGACGTCTGGCGTGAAAGAAATTCGTGCTGCAATCGAGAAAGCGCGTGAGAATAAAATGGC
GGGTCGCCGCACCATCTTATTTGTGGATGAGGTGCATCGCTTCAACAAATCTCAGCAAGACGCGTTTTTACCGCATATCG
AAGATGGCACCGTTACCTTTATTGGTGCGACGACAGAAAATCCATCGTTTGAGTTAAACAACGCATTGCTGTCACGTGCG
CGTGTGTACAAGTTAACGTCTCTCGATAAAGATGAAATCTCACTGGCGCTGAATCAAGCGATCAGTGACAAAGAGCGTGG
GCTGGGTAATACGCCTGCACACTTCGTTGATAACGTATTAGACCGCCTAGCAGAACTGGTAAACGGTGATGCTCGCATGT
CTCTCAACTACCTTGAGCTACTCTATGATATGGCAGAGGATAATGCGAAGGGCGAAAAAGAAATCACGCTTAAGTTGCTT
GCGGAAGTCGCAGGGGAGAAGGTCTCTCGCTTCGATAACAAAGGCGATATTTGGTACGACTTAATCTCTGCTGTACACAA
GTCGATTCGTGGCTCTAACCCTGATGCCGCGCTTTACTGGGCTGCACGTATGATTGCAGCAGGTTGCGACCCTTTGTACA
TTGCTCGACGCTTATTGGCGATCGCTTCTGAAGATGTAGGTAATGCTGACCCTCGCGCAATGCAAGTGGCACTTTCCGCT
TGGGATTGCTTTACCCGTGTTGGCCCGGCAGAAGGTGAGCGTGCGATTGCACAAGCGATCGTGTACTTAGCATGTGCGCC
AAAAAGTAATGCGGTATACGTGGCGTGGAAACAAGCGCTCACAGATGCTCATAACTTGCCTGAATATGAAGTGCCGCATC
ACCTTCGAAATGCACCGACCAGTTTGATGAAAGACATGGGTTATGGGGCAGAGTATCGTTACGCGCACGATGAGCCTGGC
GCTTACGCCGCAGGTGAGCAATATTTGCCGCCTGAAATGGGTGATCGTAGGTACTATCAGCCGACAAATCGTGGTCTAGA
GACCAAAATCGGCGAAAAGTTAGATTACTTGGCTACTTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (192-270)

• ATPase family associated with various cellular activities (AAA) (AAA) (56-161)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-437)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.48	93.792	0.37