Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I5367_RS08085 Genome accession   NZ_CP065539
Coordinates   1600446..1601225 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595446..1606225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS08065 (I5367_08065) trmFO 1596133..1597440 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I5367_RS08070 (I5367_08070) xerC 1597510..1598427 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  I5367_RS08075 (I5367_08075) hslV 1598443..1598988 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  I5367_RS08080 (I5367_08080) hslU 1599005..1600408 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  I5367_RS08085 (I5367_08085) codY 1600446..1601225 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I5367_RS08090 (I5367_08090) flgB 1601579..1601968 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  I5367_RS08095 (I5367_08095) flgC 1601968..1602420 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  I5367_RS08100 (I5367_08100) fliE 1602431..1602751 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  I5367_RS08105 (I5367_08105) fliF 1602794..1604404 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  I5367_RS08110 (I5367_08110) fliG 1604417..1605433 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  I5367_RS08115 (I5367_08115) fliH 1605426..1606181 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=511759 I5367_RS08085 WP_003154263.1 1600446..1601225(+) (codY) [Bacillus amyloliquefaciens strain DGL1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=511759 I5367_RS08085 WP_003154263.1 1600446..1601225(+) (codY) [Bacillus amyloliquefaciens strain DGL1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471