Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IQE12_RS08285 Genome accession   NZ_CP065515
Coordinates   1697380..1697826 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GDY8P96A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692380..1702826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE12_RS08255 (IQE12_08255) gcvPA 1693306..1694652 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IQE12_RS08260 (IQE12_08260) gcvT 1694672..1695763 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IQE12_RS08265 (IQE12_08265) - 1695922..1696446 (-) 525 WP_001015121.1 shikimate kinase -
  IQE12_RS08270 (IQE12_08270) - 1696436..1696582 (-) 147 WP_001789879.1 hypothetical protein -
  IQE12_RS08275 (IQE12_08275) - 1696679..1697176 (-) 498 Protein_1643 competence type IV pilus minor pilin ComGF -
  IQE12_RS08280 (IQE12_08280) comGE 1697094..1697393 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IQE12_RS08285 (IQE12_08285) comGD 1697380..1697826 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IQE12_RS08290 (IQE12_08290) comGC 1697804..1698115 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IQE12_RS08295 (IQE12_08295) comGB 1698129..1699199 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IQE12_RS08300 (IQE12_08300) comGA 1699171..1700145 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IQE12_RS08305 (IQE12_08305) - 1700197..1700820 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  IQE12_RS08310 (IQE12_08310) - 1700817..1701146 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IQE12_RS08315 (IQE12_08315) - 1701146..1702132 (-) 987 WP_000161314.1 ROK family glucokinase -
  IQE12_RS08320 (IQE12_08320) - 1702129..1702332 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=511550 IQE12_RS08285 WP_001788899.1 1697380..1697826(-) (comGD) [Staphylococcus aureus strain GDY8P96A]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=511550 IQE12_RS08285 WP_001788899.1 1697380..1697826(-) (comGD) [Staphylococcus aureus strain GDY8P96A]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1