Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IRB79_RS22440 Genome accession   NZ_CP065511
Coordinates   4460622..4462991 (-) Length   789 a.a.
NCBI ID   WP_243505016.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4455622..4467991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS22425 (IRB79_22370) dtd 4457171..4457611 (-) 441 WP_243505009.1 D-aminoacyl-tRNA deacylase -
  IRB79_RS22430 (IRB79_22375) - 4457626..4459821 (-) 2196 WP_206838897.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IRB79_RS22435 (IRB79_22380) - 4460119..4460631 (-) 513 WP_243505010.1 adenine phosphoribosyltransferase -
  IRB79_RS22440 (IRB79_22385) recJ 4460622..4462991 (-) 2370 WP_243505016.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IRB79_RS22445 (IRB79_22390) - 4463153..4463470 (-) 318 WP_243505017.1 lipopolysaccharide assembly LapA domain-containing protein -
  IRB79_RS22450 (IRB79_22395) - 4463495..4464397 (-) 903 WP_243505019.1 cation diffusion facilitator family transporter -
  IRB79_RS22455 (IRB79_22400) secDF 4464538..4466802 (-) 2265 WP_243505020.1 protein translocase subunit SecDF -
  IRB79_RS22460 (IRB79_22405) - 4467101..4467397 (-) 297 WP_243505021.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88396.84 Da        Isoelectric Point: 5.2609

>NTDB_id=511503 IRB79_RS22440 WP_243505016.1 4460622..4462991(-) (recJ) [Cytobacillus oceanisediminis strain N497-ZHONG]
MLHSRTRWIVRQTQEDKVQQLSKELNIAPLAASLLINRGMDTVDSARYFLLDKDQEFHDPFLMTDMAKAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEHAADTGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGPELPEAWAIVHPKHPDSRYPFRELAGVGVAFKLAHALYGELPDHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLNALFKAAGIELPSISEETIGFTIGPRLNAAGRLESADPAVDLLLTKDPYEAQAIAEEIEMLNKE
RQAIVNDIAAQAVKEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSEKRLAKGSARSIEGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMHLLAPFGM
GNPKPKVMIKDANIAAMRKIGSDQTHIKITIENDGSSLDGIGFGLGHLHEHISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQNVIPLENTTWIFFNEEHISKFRTYAGENMVKITSEEDAEALRLEGSNIVLADLPPSKE
MLAHVFSGKKPARIYAHFYKEDSDYFSTIPTRDHFKWYFALIAKKGSIDIRRHGNDIAKHKGWSRETVDFMSQVFFELDF
VKINNGVISLNNTSIKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=511503 IRB79_RS22440 WP_243505016.1 4460622..4462991(-) (recJ) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACACAGGAGGATAAGGTGCAGCAGCTTTCAAAGGAATTGAATAT
TGCTCCTCTTGCAGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTTTATTGGATAAAG
ACCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAAAAGCTGTTTCCAGAATAAAAGAAGCAATTGAAAAACAG
GAACCTATCTTAATTTTTGGTGATTATGATGCGGATGGAGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGACGTCCAATTCTACATACCGAATCGATTTACTGAAGGCTATGGACCAAATATCCCGGCTTTTGAACATGCCG
CTGATACCGGCATCCGTTTAATTATTACTGTAGATACAGGGATCTCGGCTGTAAACGAAGCAAAGGCTGCAAAAGAGCTT
GGAATGGATTTGATTATTACAGATCACCATGAGCCTGGCCCGGAGCTTCCGGAAGCATGGGCAATTGTGCATCCTAAGCA
TCCGGACAGCAGATACCCATTCCGGGAACTGGCCGGAGTTGGAGTAGCATTTAAGCTTGCACATGCGCTATATGGTGAAC
TGCCTGATCACCTTTTGGAAATAGCTGCAATTGGCACAATTGCCGACCTTGTTTCTTTAACGGGAGAGAACAGGCTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAGAATACAGGTTTGAATGCCTTGTTTAAAGCGGCAGGAATCGAACT
TCCATCCATTAGTGAAGAAACAATCGGCTTTACAATCGGGCCTCGCCTCAATGCGGCCGGCAGGCTTGAAAGTGCGGATC
CTGCAGTGGATTTGCTCCTGACAAAAGATCCTTATGAAGCACAAGCCATTGCTGAAGAAATTGAAATGTTAAATAAAGAG
AGGCAAGCTATTGTCAATGACATAGCAGCTCAAGCGGTTAAAGAGGTCGAAACAAATTTTCCAATCAGTGAGAATTCAGT
AATTGTTGTAGGCAAAGAAGGCTGGAATGCCGGTGTAATCGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CGGCCATTGTTCTCAGTTATGACAGTGAAAAAAGGCTGGCAAAGGGATCAGCAAGAAGTATAGAAGGTTTTGATCTGTTC
AAAAATCTTTCTGAATGCCGGGATATCCTTCCTCACTTTGGAGGGCATCCAATGGCGGCAGGAATGACCTTGTCAATTGA
ATCGGTCGATGACCTCAGGGATAGACTGAATACTCTTGCAAATGAACAGCTGACCGAGGAGGATTTTATTCCCGTAACCA
GCATTGATGGTGTCTTCCATCTAAAAGATATCAGCCTCTCTTCTATAGAGGAAATGCATCTGCTCGCTCCATTTGGAATG
GGAAATCCAAAACCGAAAGTCATGATAAAAGATGCCAATATTGCCGCTATGAGAAAAATCGGATCTGATCAAACTCATAT
AAAGATCACCATTGAGAATGATGGGTCTTCCCTTGATGGGATAGGCTTTGGCCTCGGACATTTGCATGAGCATATTTCAC
CATATTCCAAGCTATCGGTTATTGGCGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATCTTCCTGCAG
GATATGGCAGTGAACTCCTGGCAGCTATTCGATATCCGGAGTTTAAAGCGGCTCGAAAGGCTTCAAAACGTCATTCCCTT
GGAAAACACAACATGGATCTTTTTTAATGAGGAACATATATCCAAGTTCAGGACATATGCAGGGGAAAACATGGTGAAAA
TAACATCTGAAGAGGATGCTGAAGCTTTAAGACTAGAAGGCTCAAACATCGTGCTTGCTGATTTGCCGCCTTCAAAGGAA
ATGCTTGCTCATGTATTCTCTGGAAAAAAACCTGCCAGAATTTATGCTCATTTTTATAAAGAGGATAGTGACTATTTCAG
CACTATTCCAACAAGAGATCATTTTAAGTGGTATTTTGCCCTGATTGCTAAAAAAGGCTCGATCGATATCAGGCGTCATG
GGAATGACATAGCCAAGCATAAGGGATGGAGCAGGGAAACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGATTTT
GTTAAAATAAACAATGGTGTTATTTCGTTAAACAATACATCAATTAAACGTGATTTAGCTGATTCGCGAACCTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(317-438)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.928

98.352

0.55