Detailed information NTG0511502

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: IRB79_RS22345
• Genome accession: NZ_CP065511
• Coordinates: 4438929..4441355 (-)
• Length: 808 a.a.
• NCBI ID: WP_243504987.1
• Uniprot ID: -
• Organism: Cytobacillus oceanisediminis strain N497-ZHONG
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4433929..4446355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IRB79_RS22315 (IRB79_22260)	-	4436309..4437397 (-)	1089	WP_243504982.1	AI-2E family transporter	-
IRB79_RS22320 (IRB79_22265)	-	4437555..4437689 (-)	135	WP_206838874.1	YrzQ family protein	-
IRB79_RS22325 (IRB79_22270)	-	4437715..4437906 (-)	192	WP_221878454.1	hypothetical protein	-
IRB79_RS22330 (IRB79_22275)	-	4437922..4438392 (-)	471	WP_243504984.1	PRC-barrel domain-containing protein	-
IRB79_RS22335 (IRB79_22280)	-	4438514..4438666 (-)	153	WP_221878456.1	hypothetical protein	-
IRB79_RS22340 (IRB79_22285)	-	4438704..4438865 (-)	162	WP_243504985.1	hypothetical protein	-
IRB79_RS22345 (IRB79_22290)	recD2	4438929..4441355 (-)	2427	WP_243504987.1	ATP-dependent RecD-like DNA helicase	Machinery gene
IRB79_RS22350 (IRB79_22295)	-	4441383..4442048 (-)	666	WP_243504988.1	tetratricopeptide repeat protein	-
IRB79_RS22355 (IRB79_22300)	mnmA	4442165..4443280 (-)	1116	WP_243504989.1	tRNA 2-thiouridine(34) synthase MnmA	-
IRB79_RS22360 (IRB79_22305)	-	4443476..4444618 (-)	1143	WP_243504991.1	cysteine desulfurase family protein	-
IRB79_RS22365 (IRB79_22310)	-	4444688..4445107 (-)	420	WP_009333072.1	Rrf2 family transcriptional regulator	-
IRB79_RS22370 (IRB79_22315)	-	4445107..4445793 (-)	687	WP_243504993.1	YitT family protein	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91387.48 Da
• Isoelectric Point: 4.9786

>NTDB_id=511502 IRB79_RS22345 WP_243504987.1 4438929..4441355(-) (recD2) [Cytobacillus oceanisediminis strain N497-ZHONG]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSILDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYIEARPLLQSVKKLLEENKRDTIEYRNISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGIEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAQKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEAAYTRQDLNQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLDDETVQEDTAESSLPETLTLEEKLLHADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=511502 IRB79_RS22345 WP_243504987.1 4438929..4441355(-) (recD2) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAGGGCAGACATCTTGTCACAATCTTTCA
TAATGAACAAAACTTATATACGGTTGTGCGCATTCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGCTATCTGCCAAAGATGCATGAGCATGAAACTTATATTTTCTATGGTGAATTCAAAGATCACCCTAAGTTCGGC
GTCCAATTCCACGCAAGCCATTACAGGAAAGATCTTCCCCAGACCAAGCAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTCGAGACACTTGGCGAAGATGCGATCACACGCATTCTTAATC
AGCCGTCTATCCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCTAAATTGCTTTACGACACGCTTATGGAACATCAA
GGGCTTGAGCAAGCCATGATTGCACTTAATCAATATGGTTTTGGCCCACAGCTTTCCATGAGAATTTATCAAGTGTATAA
AGAAATGACGATCGAAGTCGTTCAAAACAATCCTTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGAAATCATCCTGATCGTATAAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTCTATATTGAAGCAAGACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATACCATTGAATACAGGAATATATCCAATGAACTCATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AAAAGATATACCTTCCATCCCTATATTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAGCAAACACAG
TATGATGAACAGTTCCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTATGCCCC
AACCCAAAAGGAAGCTATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCGGGTACAGGAAAAACAA
CTGTTATAAAGGGAATTGTTGAATTATATGCCGAACTGCATGGCTGCTCCCTTGAACCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCACCAACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCCGCTGTAAC
CATTCACCGCCTTCTTGGCTGGAATGGGATCGAAGGGTTTGACCGTCACGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTTGATGAGACATCAATGGTTGATGTTTGGCTTGCTAACCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTAATC
CTTGTGGGGGATGAAGATCAGCTGCCTTCAGTGGGGCCAGGCCAGGTTTTGAAAGATCTTTTGCGTTCAGAACGTATTCC
TACTGTTCGCCTTACAGATATTTACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCCCACGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACTGATCGTTCCTTTATTAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAGGTTGTCCTGAATGCCCAAAAGAAAGGGTATTCTTCGAAAGATATTCAGGTGCTTGCCCCTATGTACCGTGGACC
CGCAGGAATTGACAGGCTAAACGAGATATTGCAGGAAATTCTGAATCCAAATCCTGATGGAACGAGGAAAGAGTTGTCCT
TTGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAAAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
GGAAGCTGCATACACAAGGCAGGATCTCAATCAGATTACTCATGCCTACTGCTGTTCTGTCCATAAATCCCAGGGAAGTG
AATTCCCTATAGTCATTTTGCCTGTTGTTAAAAGCTATTACAGGATGCTTAGAAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTAATACTGTGCGGTGAAGAAGATGCGTTAAAAATCGGTGTGGAACGTGCGGATGAACAGGCACG
CCTGACAACTTTATCTGAAAAGCTTAGAGATGCAATCCCGTTAGATGATGAAACAGTGCAGGAAGATACAGCTGAATCTT
CTCTGCCGGAAACACTAACCCTCGAGGAAAAGCTTCTCCACGCCGATCCCATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-552)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	61.982	98.639	0.611