Detailed information NTG0051146

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: SIR_RS17985
• Genome accession: NC_022246
• Coordinates: 1712929..1714200 (+)
• Length: 423 a.a.
• NCBI ID: WP_021003231.1
• Uniprot ID: T1ZFG6
• Organism: Streptococcus intermedius B196
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1707929..1719200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIR_RS17960 (SIR_1615)	-	1709600..1710343 (-)	744	WP_021003226.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-
SIR_RS17965 (SIR_1616)	prmA	1710344..1711297 (-)	954	WP_021003227.1	50S ribosomal protein L11 methyltransferase	-
SIR_RS17970 (SIR_1617)	-	1711442..1711912 (-)	471	WP_021003228.1	GNAT family N-acetyltransferase	-
SIR_RS17975 (SIR_1618)	-	1711909..1712361 (-)	453	WP_021003229.1	NUDIX hydrolase	-
SIR_RS17980 (SIR_1619)	-	1712371..1712841 (-)	471	WP_021003230.1	DUF3013 family protein	-
SIR_RS17985 (SIR_1620)	rarA	1712929..1714200 (+)	1272	WP_021003231.1	replication-associated recombination protein A	Machinery gene
SIR_RS17995 (SIR_1622)	-	1714942..1715751 (+)	810	WP_021003232.1	Cof-type HAD-IIB family hydrolase	-
SIR_RS18000 (SIR_1623)	-	1715762..1716706 (+)	945	WP_021003233.1	LacI family DNA-binding transcriptional regulator	-
SIR_RS19760	-	1717268..1717580 (-)	313	Protein_1616	hypothetical protein	-
SIR_RS18010 (SIR_1625)	-	1717735..1718502 (-)	768	WP_021003234.1	epoxyqueuosine reductase QueH	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46810.47 Da
• Isoelectric Point: 6.1939

>NTDB_id=51146 SIR_RS17985 WP_021003231.1 1712929..1714200(+) (rarA) [Streptococcus intermedius B196]
MPENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRKAIQ
LALTDKERGFDFPVKLDEEALDFIAVSTNGDLRSAYNSLDLAILSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYLAMDKALADLRKNGNLPIPRHLRDGHYAGSKALGNALDYLYPHSYPGNWVKQDYLPDKIKDADYFTP
NENGKYERALGMTKDKIDHLKKD

Nucleotide

• Length: 1272 bp

>NTDB_id=51146 SIR_RS17985 WP_021003231.1 1712929..1714200(+) (rarA) [Streptococcus intermedius B196]
ATGCCAGAAAATCTCGCCTTGCGTATGAGGCCGACCGACATTGATCAGATCATCGGCCAGCAGCATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTATCCTCGATGATTCTCTACGGGCCACCGGGTATCGGCAAAACCT
CTATCGCCTCAGCTATCGCCGGCACGACCAAATATGCTTTTCGAACCTTTAATGCCACCGTAGATAGCAAGAAGCGTCTG
CAAGAGATCGCTGAAGAAGCGAAATTTTCCGGCGGTCTAGTTCTCCTACTGGACGAGATTCACCGTTTGGACAAGACCAA
GCAAGACTTTCTGCTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACAGAAAATCCTTTCTTTTCTG
TCACCCCTGCTATTCGAAGCCGGGTTCAGATATTTGAGCTGGAGCCCCTTAGCAACGACGACATTCGAAAAGCCATTCAG
CTAGCCTTGACGGATAAGGAGCGAGGCTTTGATTTCCCAGTGAAGCTAGATGAGGAAGCTCTGGACTTCATCGCCGTCTC
TACCAACGGAGACCTGCGCTCCGCCTATAACTCGCTAGACTTAGCCATACTCTCTACCCCAGAAGATGACAAGGGCATCC
GCCACATTACGCTTGATGTGATGGAAAACAGCCTGCAAAAGAGCTATATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGCGGCTCCGATGTCAATGCCAGTCTCCACTACGCAGCACGCCTCGTTGA
GGCAGGAGACCTGCCTAGCCTGGCTCGACGCCTGACCGTTATCGCTTACGAAGATATTGGCCTGGCAAATCCAGACGCTC
AAGTTCATACCGTTACAGCTCTAGAAGCTGCCCAACGGATCGGCTTTCCTGAAGCCCGTATCCTTATTGCCAATATTGTT
ATCGATCTGGCTCTCTCTCCCAAATCCAACTCAGCCTACCTAGCCATGGACAAGGCCTTAGCCGACCTACGAAAGAATGG
AAACCTGCCCATTCCTCGCCACTTACGCGACGGTCACTATGCCGGCAGCAAGGCATTGGGCAACGCACTAGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAAGACTATCTGCCTGACAAGATAAAAGACGCCGATTATTTCACTCCC
AATGAAAATGGCAAATACGAGCGAGCCCTTGGCATGACGAAAGATAAGATTGATCACCTCAAAAAAGACTAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-410)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• AAA C-terminal domain (AAA_assoc_2) (173-251)

3D structure

• AlphaFold DB: T1ZFG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.42	97.872	0.582