Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | IQ781_RS24315 | Genome accession | NZ_CP065509 |
| Coordinates | 4729032..4729811 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus sp. N447-1 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4690191..4745257 | 4729032..4729811 | within | 0 |
Gene organization within MGE regions
Location: 4690191..4745257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQ781_RS24125 (IQ781_24070) | rsmB | 4690413..4691747 (+) | 1335 | WP_001249666.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| IQ781_RS24130 (IQ781_24075) | rlmN | 4691752..4692840 (+) | 1089 | WP_139846731.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| IQ781_RS24135 (IQ781_24080) | - | 4692845..4693597 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| IQ781_RS24140 (IQ781_24085) | pknB | 4693606..4695579 (+) | 1974 | WP_139846732.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| IQ781_RS24145 (IQ781_24090) | rsgA | 4695827..4696708 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| IQ781_RS24150 (IQ781_24095) | rpe | 4696711..4697355 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| IQ781_RS24155 (IQ781_24100) | - | 4697424..4698104 (+) | 681 | WP_002026234.1 | thiamine diphosphokinase | - |
| IQ781_RS24160 (IQ781_24105) | spoVM | 4698171..4698251 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| IQ781_RS24165 (IQ781_24110) | rpmB | 4698325..4698513 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| IQ781_RS24170 (IQ781_24115) | - | 4698890..4699252 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| IQ781_RS24175 (IQ781_24120) | - | 4699275..4700951 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| IQ781_RS24180 (IQ781_24125) | recG | 4701242..4703290 (+) | 2049 | WP_001000816.1 | ATP-dependent DNA helicase RecG | - |
| IQ781_RS24185 (IQ781_24130) | fapR | 4703379..4703972 (+) | 594 | WP_000747348.1 | transcription factor FapR | - |
| IQ781_RS24190 (IQ781_24135) | plsX | 4703969..4704961 (+) | 993 | WP_063220787.1 | phosphate acyltransferase PlsX | - |
| IQ781_RS24195 (IQ781_24140) | fabD | 4704976..4705920 (+) | 945 | WP_000515899.1 | ACP S-malonyltransferase | - |
| IQ781_RS24200 (IQ781_24145) | fabG | 4705920..4706660 (+) | 741 | WP_000911773.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| IQ781_RS24205 (IQ781_24150) | acpP | 4706730..4706963 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| IQ781_RS24210 (IQ781_24155) | rncS | 4707022..4707759 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| IQ781_RS24215 (IQ781_24160) | smc | 4707906..4711475 (+) | 3570 | WP_000478973.1 | chromosome segregation protein SMC | - |
| IQ781_RS24220 (IQ781_24165) | ftsY | 4711491..4712480 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| IQ781_RS24225 (IQ781_24170) | - | 4712614..4712946 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| IQ781_RS24230 (IQ781_24175) | ffh | 4712959..4714308 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| IQ781_RS24235 (IQ781_24180) | rpsP | 4714410..4714682 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| IQ781_RS24240 (IQ781_24185) | - | 4714697..4714924 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| IQ781_RS24245 (IQ781_24190) | rimM | 4715046..4715561 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| IQ781_RS24250 (IQ781_24195) | trmD | 4715561..4716295 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| IQ781_RS24255 (IQ781_24200) | rplS | 4716442..4716786 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| IQ781_RS24260 (IQ781_24205) | lepB | 4716888..4717439 (+) | 552 | WP_000711853.1 | signal peptidase I | - |
| IQ781_RS24265 (IQ781_24210) | ylqF | 4717460..4718350 (+) | 891 | WP_000236704.1 | ribosome biogenesis GTPase YlqF | - |
| IQ781_RS24270 (IQ781_24215) | - | 4718407..4719180 (+) | 774 | WP_001194265.1 | ribonuclease HII | - |
| IQ781_RS24275 (IQ781_24220) | sucC | 4719374..4720534 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| IQ781_RS24280 (IQ781_24225) | sucD | 4720554..4721456 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| IQ781_RS24285 (IQ781_24230) | dprA | 4721545..4722414 (+) | 870 | WP_139846733.1 | DNA-processing protein DprA | - |
| IQ781_RS24290 (IQ781_24235) | topA | 4722559..4724637 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| IQ781_RS24295 (IQ781_24240) | trmFO | 4724686..4725990 (+) | 1305 | WP_000213003.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| IQ781_RS24300 (IQ781_24245) | xerC | 4726056..4726955 (+) | 900 | WP_001101243.1 | tyrosine recombinase XerC | - |
| IQ781_RS24305 (IQ781_24250) | hslV | 4726998..4727540 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| IQ781_RS24310 (IQ781_24255) | hslU | 4727563..4728954 (+) | 1392 | WP_000550078.1 | ATP-dependent protease ATPase subunit HslU | - |
| IQ781_RS24315 (IQ781_24260) | codY | 4729032..4729811 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| IQ781_RS24320 (IQ781_24265) | rpsB | 4730160..4730861 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| IQ781_RS24325 (IQ781_24270) | tsf | 4730965..4731852 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| IQ781_RS24330 (IQ781_24275) | pyrH | 4731919..4732641 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| IQ781_RS24335 (IQ781_24280) | frr | 4732644..4733201 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| IQ781_RS24340 (IQ781_24285) | uppS | 4733287..4734063 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| IQ781_RS24345 (IQ781_24290) | cdsA | 4734081..4734872 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| IQ781_RS24350 (IQ781_24295) | dxr | 4734896..4736038 (+) | 1143 | WP_000790373.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| IQ781_RS24355 (IQ781_24300) | rseP | 4736056..4737312 (+) | 1257 | WP_001090243.1 | RIP metalloprotease RseP | - |
| IQ781_RS24360 (IQ781_24305) | - | 4737422..4739122 (+) | 1701 | WP_000814302.1 | proline--tRNA ligase | - |
| IQ781_RS24365 (IQ781_24310) | - | 4739247..4743548 (+) | 4302 | WP_000060005.1 | PolC-type DNA polymerase III | - |
| IQ781_RS24370 (IQ781_24315) | rimP | 4743885..4744355 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=511456 IQ781_RS24315 WP_000421290.1 4729032..4729811(+) (codY) [Bacillus sp. N447-1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=511456 IQ781_RS24315 WP_000421290.1 4729032..4729811(+) (codY) [Bacillus sp. N447-1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |