Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SPAF_RS03935 Genome accession   NC_017905
Coordinates   776064..776903 (+) Length   279 a.a.
NCBI ID   WP_041826266.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 771064..781903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03905 (Spaf_0745) - 771319..772200 (+) 882 WP_014713090.1 F0F1 ATP synthase subunit gamma -
  SPAF_RS03910 (Spaf_0746) atpD 772286..773692 (+) 1407 WP_013903321.1 F0F1 ATP synthase subunit beta -
  SPAF_RS03915 (Spaf_0747) - 773706..774125 (+) 420 WP_003002471.1 F0F1 ATP synthase subunit epsilon -
  SPAF_RS03920 (Spaf_0748) - 774224..774454 (+) 231 WP_013903322.1 DUF1146 family protein -
  SPAF_RS03925 (Spaf_0749) murA 774521..775804 (+) 1284 WP_014713091.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SPAF_RS03930 (Spaf_0750) - 775794..775982 (+) 189 WP_014713092.1 DNA-directed RNA polymerase subunit beta -
  SPAF_RS03935 (Spaf_0751) endA 776064..776903 (+) 840 WP_041826266.1 DNA/RNA non-specific endonuclease Machinery gene
  SPAF_RS03940 (Spaf_0752) - 776985..777707 (+) 723 WP_003017757.1 M57 family metalloprotease -
  SPAF_RS03945 (Spaf_0753) - 777812..779719 (+) 1908 WP_014713094.1 ABC-F family ATP-binding cassette domain-containing protein -
  SPAF_RS03950 (Spaf_0754) - 779928..780284 (+) 357 WP_041826267.1 hypothetical protein -
  SPAF_RS03955 (Spaf_0755) - 780289..781164 (+) 876 WP_014713096.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30400.83 Da        Isoelectric Point: 9.2915

>NTDB_id=51133 SPAF_RS03935 WP_041826266.1 776064..776903(+) (endA) [Streptococcus parasanguinis FW213]
MTKQIVSKRTKQTLAGFVVATALAIGGYYFNQPSVKEATDQVVSVVTSSQQETPSKELASSVLTKSAHSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDRNATGSGLTEWKPAGWHQVHNLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPQNIAVQTAWSNQANDPHSTGQNYYETLVRKALDKNKRVRYRVTLIYNQPEDLIPL
GSQIEAKSSDGTLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=51133 SPAF_RS03935 WP_041826266.1 776064..776903(+) (endA) [Streptococcus parasanguinis FW213]
ATGACAAAACAAATAGTAAGCAAACGAACCAAACAAACCCTAGCAGGCTTCGTGGTTGCAACAGCCTTAGCAATTGGTGG
TTATTATTTTAATCAACCGTCGGTAAAAGAAGCGACGGATCAGGTTGTTTCCGTGGTGACTAGTAGCCAACAAGAAACAC
CTAGTAAAGAGTTAGCTAGCTCTGTACTAACGAAATCTGCCCATTCACAATTGGGGAATGACTTGGAATGGAACGGAGCT
GGAGCCTTTGTAGTTAAGGGGAATCGAACAGATCTGGATGCCAGTGTGGCTAGTCAACCCTATGCGGATAACAAGACAAA
AGAAGTGAATGGAAAGACCGTGCCGACGGTTGCGAACGCCATTATGACCAAGGCGACTCGCCAGTATAGAGATCGCAATG
CAACAGGAAGTGGCCTAACCGAATGGAAACCTGCAGGTTGGCATCAGGTCCACAATCTGTCAGGCGAGTATGACCATGCA
GTGGATCGAGGCCATCTATTGGGCTACGCCTTGATCGGCAATCTCAAAGGTTTCGATGCTTCGACAAGCAATCCCCAAAA
TATCGCCGTACAAACGGCTTGGTCCAATCAAGCCAATGATCCTCATTCCACTGGTCAAAACTACTATGAGACCCTGGTTC
GAAAAGCACTGGATAAGAACAAGCGGGTTCGCTATCGGGTCACCTTGATCTACAACCAGCCAGAAGATTTGATTCCTTTA
GGTTCTCAGATCGAAGCTAAATCGAGTGATGGAACCCTTGAGTTCAATGTCTTTGTTCCCAATGTTCAAAGTGGGATTAG
CCTGGATTATCAGACAGGCAAAGTAACCGTCCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.364

98.566

0.634
  endA Streptococcus pneumoniae D39

64.364

98.566

0.634
  endA Streptococcus pneumoniae R6

64.364

98.566

0.634
  endA Streptococcus pneumoniae TIGR4

64.364

98.566

0.634

Multiple sequence alignment