Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST4067_RS01070 Genome accession   NZ_CP065496
Coordinates   185560..186498 (+) Length   312 a.a.
NCBI ID   WP_263604574.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 180560..191498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS01045 (ST4067_01050) - 180568..181817 (-) 1250 Protein_151 ISL3 family transposase -
  ST4067_RS01050 (ST4067_01055) - 182158..183231 (+) 1074 Protein_152 peptide ABC transporter substrate-binding protein -
  ST4067_RS01055 (ST4067_01060) - 183239..183457 (+) 219 Protein_153 ABC transporter permease subunit -
  ST4067_RS01060 (ST4067_01065) - 183468..184502 (+) 1035 Protein_154 ABC transporter permease -
  ST4067_RS01065 (ST4067_01070) - 184516..185558 (+) 1043 Protein_155 ABC transporter ATP-binding protein -
  ST4067_RS01070 (ST4067_01075) amiF 185560..186498 (+) 939 WP_263604574.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS01075 - 186720..186908 (+) 189 WP_011225379.1 hypothetical protein -
  ST4067_RS01080 (ST4067_01085) hslO 187055..187921 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  ST4067_RS01085 (ST4067_01090) dusB 187914..188891 (+) 978 WP_263604575.1 tRNA dihydrouridine synthase DusB -
  ST4067_RS01090 (ST4067_01095) - 189094..189957 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35279.82 Da        Isoelectric Point: 6.0186

>NTDB_id=511058 ST4067_RS01070 WP_263604574.1 185560..186498(+) (amiF) [Streptococcus thermophilus strain 4067]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKHQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=511058 ST4067_RS01070 WP_263604574.1 185560..186498(+) (amiF) [Streptococcus thermophilus strain 4067]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCACGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCATCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516