Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SIR_RS12275 Genome accession   NC_022246
Coordinates   492491..494260 (+) Length   589 a.a.
NCBI ID   WP_021002541.1    Uniprot ID   T1ZD73
Organism   Streptococcus intermedius B196     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 487491..499260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS19585 (SIR_0495) - 487966..488196 (+) 231 WP_014829739.1 DUF1146 family protein -
  SIR_RS12255 (SIR_0496) murA 488234..489514 (+) 1281 WP_003072160.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SIR_RS12260 - 489507..489683 (+) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SIR_RS12265 (SIR_0497) endA 489746..490591 (+) 846 WP_021002539.1 DNA/RNA non-specific endonuclease Machinery gene
  SIR_RS12270 (SIR_0498) - 490745..492481 (+) 1737 WP_021002540.1 ABC transporter ATP-binding protein -
  SIR_RS12275 (SIR_0499) rcrQ 492491..494260 (+) 1770 WP_021002541.1 ABC transporter ATP-binding protein Regulator
  SIR_RS12280 (SIR_0500) - 494633..495634 (-) 1002 WP_021002542.1 YdcF family protein -
  SIR_RS12290 - 496361..496741 (+) 381 WP_041787389.1 CidA/LrgA family protein -
  SIR_RS12295 (SIR_0502) - 496734..497429 (+) 696 WP_021002543.1 LrgB family protein -
  SIR_RS12300 (SIR_0503) - 497553..498065 (+) 513 WP_003072179.1 adenine phosphoribosyltransferase -
  SIR_RS20330 - 498209..498484 (+) 276 WP_239493858.1 homoserine O-acetyltransferase/O-succinyltransferase family protein -
  SIR_RS20335 (SIR_0504) - 498738..498980 (+) 243 WP_239493857.1 homoserine O-acetyltransferase/O-succinyltransferase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66017.15 Da        Isoelectric Point: 5.3626

>NTDB_id=51089 SIR_RS12275 WP_021002541.1 492491..494260(+) (rcrQ) [Streptococcus intermedius B196]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFGVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVIAGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRDFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIVDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=51089 SIR_RS12275 WP_021002541.1 492491..494260(+) (rcrQ) [Streptococcus intermedius B196]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTAGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAATACAACATATGTCTTTGGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGTGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTACTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCGGTCGTTGGTGGTTTGCAAGTTATTGCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTATGGCAAGTAAACCAGCCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTTGAAAGCAAACCGCTCATTCGCGACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTTATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGCAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTGTGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTCCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTTGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACAAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-513)

ABC transporter transmembrane region (ABC_membrane)

(20-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZD73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.276

100

0.447