Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SIR_RS11000 Genome accession   NC_022246
Coordinates   238025..240379 (-) Length   784 a.a.
NCBI ID   WP_021002395.1    Uniprot ID   T1ZCI9
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233025..245379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS10985 (SIR_0246) - 233226..233942 (-) 717 WP_044011679.1 threonine/serine exporter family protein -
  SIR_RS10990 (SIR_0247) pflB 234103..236418 (-) 2316 WP_003074645.1 formate C-acetyltransferase -
  SIR_RS10995 (SIR_0248) dinB 236750..237814 (+) 1065 WP_021002394.1 DNA polymerase IV -
  SIR_RS11000 (SIR_0249) recD/recD2/recDB 238025..240379 (-) 2355 WP_021002395.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SIR_RS11005 (SIR_0250) lepB 240605..241219 (-) 615 WP_020998280.1 signal peptidase I -
  SIR_RS11010 (SIR_0251) rnhC 241223..242113 (-) 891 WP_021002396.1 ribonuclease HIII -
  SIR_RS11015 - 242199..242504 (+) 306 WP_003074635.1 hypothetical protein -
  SIR_RS11020 (SIR_0252) - 242501..243049 (+) 549 WP_003070931.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88295.50 Da        Isoelectric Point: 4.7375

>NTDB_id=51073 SIR_RS11000 WP_021002395.1 238025..240379(-) (recD/recD2/recDB) [Streptococcus intermedius B196]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLIKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLFEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVANELAHLIEEDKVQHVDTKIFENSLFFAEEGICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGALPIDFIEKKADRSYFEVRSEQIPQMIERIVEVAIRSGIPAQNVQVL
APMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQGDRVIHLVNDAESNVFNGDLGYITDLLPAKYADSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVKN
TGTTRKTYLLQRFANLPTDGKTMHTSVDDLKTSVEDCVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=51073 SIR_RS11000 WP_021002395.1 238025..240379(-) (recD/recD2/recDB) [Streptococcus intermedius B196]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATCTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACCTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGATCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAATTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATTTGAGTACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
ATTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACGCTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAAATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAACATGTCGATACGAAAATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACCGTTATCAATGGAATTATTGCTGTCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCTGCTCCAACTGGGCGCGCTGCTAGACGCATGAATGAA
TTAACAGGACTGCCAAGTGCGACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACCAGTCATTTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAATATCT
CTTCCAATAGCAAGCTACTCATTGTCGGAGATGCCGACCAGCTACCCTCTGTCAGTCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTTACCTTAGC
TAGTCAGATTCAAAAAGGCGCTCTGCCAATTGATTTCATTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTGGAAGTCGCTATCCGTAGTGGTATTCCAGCTCAAAATGTACAAGTACTT
GCTCCTATGTACCGTGGACAAGCAGGAATTGACCACATCAATCAACTCATGCAAGATCTGATCAATCCTGTTGTAAAAGA
ACAACTCATCTTTGAAGCTACTGATGGTCAATACCGACAAGGTGATCGGGTTATTCATCTCGTCAACGATGCTGAAAGCA
ATGTGTTCAACGGTGATTTGGGTTATATCACCGATTTACTACCAGCAAAATATGCCGATTCCAAGCAAGATGAACTGACT
ATCAATTTCGACGGCAATGAAATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCCTATGCCATGAGCATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTCGTCATTTTACCAATTACCTCCAGCAGCCACCGTATGCTACAGCGCAATCTTA
TCTATACCGCCATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCTTTTGCCTTTGCTGTGAAAAAT
ACTGGCACCACCCGAAAAACCTATCTCCTTCAACGTTTTGCAAACCTACCAACAGATGGAAAAACAATGCACACTTCTGT
GGATGATTTGAAAACAAGCGTGGAAGACTGTGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

AAA domain (AAA_30)

(331-528)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZCI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.133

95.663

0.403