Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STR1_RS01035 Genome accession   NZ_CP065486
Coordinates   188842..189780 (+) Length   312 a.a.
NCBI ID   WP_011680672.1    Uniprot ID   A0A0E2Q3C4
Organism   Streptococcus thermophilus strain R1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 183842..194780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS01015 (STR1_01010) - 185506..186510 (+) 1005 Protein_159 peptide ABC transporter substrate-binding protein -
  STR1_RS01020 (STR1_01015) - 186521..186739 (+) 219 Protein_160 ABC transporter permease subunit -
  STR1_RS01025 (STR1_01020) - 186750..187784 (+) 1035 Protein_161 ABC transporter permease -
  STR1_RS01030 (STR1_01025) - 187798..188840 (+) 1043 Protein_162 ABC transporter ATP-binding protein -
  STR1_RS01035 (STR1_01030) amiF 188842..189780 (+) 939 WP_011680672.1 ATP-binding cassette domain-containing protein Regulator
  STR1_RS01040 - 190002..190190 (+) 189 WP_011225379.1 hypothetical protein -
  STR1_RS01045 (STR1_01040) hslO 190337..191203 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  STR1_RS01050 (STR1_01045) dusB 191196..192173 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  STR1_RS01055 (STR1_01050) - 192402..193670 (+) 1269 WP_011225384.1 peptidase -
  STR1_RS01060 (STR1_01055) - 193776..194219 (+) 444 WP_014607905.1 zinc-dependent MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35353.03 Da        Isoelectric Point: 6.1917

>NTDB_id=510516 STR1_RS01035 WP_011680672.1 188842..189780(+) (amiF) [Streptococcus thermophilus strain R1]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRFVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKIDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSIVKYISDRIGAMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYTTVAEAKNYKEEVKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=510516 STR1_RS01035 WP_011680672.1 188842..189780(+) (amiF) [Streptococcus thermophilus strain R1]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATTTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGATAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATTGTTAAATATATATCCGATCGTATTGGTGCAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATACTACAGTAGCAGAGGCTAAAAATTATAAAGAAGAAGTCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q3C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513