Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST90729_RS01070 Genome accession   NZ_CP065480
Coordinates   187350..188288 (+) Length   312 a.a.
NCBI ID   WP_173940584.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 182350..193288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS01050 (ST90729_01045) - 183339..183557 (+) 219 Protein_153 ABC transporter permease subunit -
  ST90729_RS01060 (ST90729_01055) - 185331..186289 (+) 959 Protein_155 ABC transporter permease -
  ST90729_RS01065 (ST90729_01060) - 186303..187348 (+) 1046 Protein_156 ABC transporter ATP-binding protein -
  ST90729_RS01070 (ST90729_01065) amiF 187350..188288 (+) 939 WP_173940584.1 ATP-binding cassette domain-containing protein Regulator
  ST90729_RS01075 (ST90729_01070) - 188510..188764 (+) 255 WP_224103662.1 hypothetical protein -
  ST90729_RS01080 (ST90729_01075) hslO 188845..189711 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  ST90729_RS01085 (ST90729_01080) dusB 189704..190681 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  ST90729_RS01090 (ST90729_01085) - 190884..191747 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35270.81 Da        Isoelectric Point: 5.9047

>NTDB_id=510165 ST90729_RS01070 WP_173940584.1 187350..188288(+) (amiF) [Streptococcus thermophilus strain 90729]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIQPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=510165 ST90729_RS01070 WP_173940584.1 187350..188288(+) (amiF) [Streptococcus thermophilus strain 90729]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCAACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513