Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST90728_RS06960 Genome accession   NZ_CP065479
Coordinates   1348024..1348194 (-) Length   56 a.a.
NCBI ID   WP_014608546.1    Uniprot ID   A0A2U2MH52
Organism   Streptococcus thermophilus strain 90728     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1344370..1351734 1348024..1348194 within 0


Gene organization within MGE regions


Location: 1344370..1351734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS06945 (ST90728_06945) - 1344370..1345621 (+) 1252 Protein_1314 ISL3 family transposase -
  ST90728_RS06950 (ST90728_06950) amiA3 1345666..1347639 (-) 1974 WP_347113821.1 peptide ABC transporter substrate-binding protein Regulator
  ST90728_RS06955 (ST90728_06955) - 1347843..1348033 (-) 191 Protein_1316 IS3 family transposase -
  ST90728_RS06960 (ST90728_06960) amiF 1348024..1348194 (-) 171 WP_014608546.1 hypothetical protein Regulator
  ST90728_RS06965 - 1348210..1348782 (-) 573 Protein_1318 TatD family hydrolase -
  ST90728_RS06970 (ST90728_06975) - 1349129..1350334 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  ST90728_RS06975 (ST90728_06980) - 1350381..1351734 (-) 1354 Protein_1320 IS3 family transposase -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6495.42 Da        Isoelectric Point: 4.6436

>NTDB_id=510140 ST90728_RS06960 WP_014608546.1 1348024..1348194(-) (amiF) [Streptococcus thermophilus strain 90728]
MEVAETEELYNNPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMV

Nucleotide


Download         Length: 171 bp        

>NTDB_id=510140 ST90728_RS06960 WP_014608546.1 1348024..1348194(-) (amiF) [Streptococcus thermophilus strain 90728]
GTGGAAGTTGCTGAGACAGAAGAGCTCTACAACAATCCTATCCATCCTTATACCAAGTCACTCTTGTCTGCTGTTCCTAT
TCCAGATCCAATCTTGGAACGTAAGAAAGTCTTGAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAG
AAATGGTATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(1-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U2MH52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

98.214

100

0.982
  amiF Streptococcus thermophilus LMD-9

98.214

100

0.982
  amiF Streptococcus salivarius strain HSISS4

98.214

100

0.982