Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KU540_RS08240 Genome accession   NZ_CP077894
Coordinates   1628923..1630197 (-) Length   424 a.a.
NCBI ID   WP_060649589.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623923..1635197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS08215 (KU540_08165) hisS 1624484..1625746 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  KU540_RS08220 (KU540_08170) aspS 1625762..1627528 (+) 1767 WP_000044803.1 aspartate--tRNA ligase -
  KU540_RS08230 (KU540_08180) - 1627861..1627989 (+) 129 WP_001827648.1 hypothetical protein -
  KU540_RS08235 (KU540_08185) - 1627989..1628762 (+) 774 WP_000682645.1 ThiF family adenylyltransferase -
  KU540_RS08240 (KU540_08190) rarA 1628923..1630197 (-) 1275 WP_060649589.1 replication-associated recombination protein A Machinery gene
  KU540_RS08245 (KU540_08195) cymR 1630282..1630704 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  KU540_RS08250 (KU540_08200) - 1630804..1630995 (+) 192 WP_000752911.1 CsbD family protein -
  KU540_RS08255 (KU540_08205) - 1631025..1631171 (+) 147 WP_225806065.1 SAS049 family protein -
  KU540_RS08260 (KU540_08210) - 1631408..1632421 (-) 1014 WP_000985881.1 LLM class flavin-dependent oxidoreductase -
  KU540_RS08265 (KU540_08215) - 1632733..1633875 (+) 1143 WP_225806064.1 cysteine desulfurase family protein -
  KU540_RS08270 (KU540_08220) mnmA 1633876..1634994 (+) 1119 WP_225806063.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47291.86 Da        Isoelectric Point: 8.3539

>NTDB_id=510118 KU540_RS08240 WP_060649589.1 1628923..1630197(-) (rarA) [Staphylococcus aureus strain 329]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=510118 KU540_RS08240 WP_060649589.1 1628923..1630197(-) (rarA) [Staphylococcus aureus strain 329]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATAGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAATTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAATGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCCATCCGTGGTAGTGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGACCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684