Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ST4052_RS08465 Genome accession   NZ_CP065476
Coordinates   1630539..1631495 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 4052     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625539..1636495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4052_RS08435 (ST4052_08500) proC 1626089..1626859 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  ST4052_RS08440 (ST4052_08505) - 1626889..1627551 (-) 663 WP_179971686.1 type II CAAX endopeptidase family protein -
  ST4052_RS08445 (ST4052_08510) - 1627654..1628102 (-) 449 Protein_1605 CAAX protease -
  ST4052_RS08450 - 1628176..1628601 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  ST4052_RS08455 (ST4052_08520) - 1628844..1629041 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  ST4052_RS08460 (ST4052_08525) - 1629290..1630483 (-) 1194 WP_022096898.1 acetate kinase -
  ST4052_RS08465 (ST4052_08530) comYH 1630539..1631495 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  ST4052_RS08470 (ST4052_08535) comGG 1631540..1631857 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  ST4052_RS08475 (ST4052_08540) comYF 1631835..1632272 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST4052_RS08480 (ST4052_08545) comGE 1632256..1632549 (-) 294 WP_347100874.1 competence type IV pilus minor pilin ComGE -
  ST4052_RS08485 (ST4052_08550) comYD 1632521..1632949 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST4052_RS08490 (ST4052_08555) comYC 1632909..1633235 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST4052_RS08495 (ST4052_08560) comYB 1633232..1634332 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST4052_RS08500 (ST4052_08565) comGA/cglA/cilD 1634214..1635155 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  ST4052_RS08505 (ST4052_08570) - 1635236..1635598 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=509970 ST4052_RS08465 WP_011226622.1 1630539..1631495(-) (comYH) [Streptococcus thermophilus strain 4052]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=509970 ST4052_RS08465 WP_011226622.1 1630539..1631495(-) (comYH) [Streptococcus thermophilus strain 4052]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGCGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682