Detailed information NTG0509612

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: I5593_RS10210
• Genome accession: NZ_CP065432
• Coordinates: 2144440..2145141 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain ATCC 17961
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2139440..2150141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5593_RS10180 (I5593_10180)	-	2139747..2140190 (-)	444	WP_001246675.1	SRPBCC family protein	-
I5593_RS10185 (I5593_10185)	tadA	2140260..2140763 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
I5593_RS10190 (I5593_10190)	-	2140770..2141894 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
I5593_RS10195 (I5593_10195)	ung	2141891..2142604 (-)	714	WP_001177526.1	uracil-DNA glycosylase	-
I5593_RS10200 (I5593_10200)	-	2142655..2143251 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
I5593_RS10205 (I5593_10205)	gspK	2143481..2144440 (-)	960	WP_000301461.1	type II secretion system minor pseudopilin GspK	-
I5593_RS10210 (I5593_10210)	xcpW	2144440..2145141 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I5593_RS10215 (I5593_10215)	xcpV	2145141..2145521 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
I5593_RS10220 (I5593_10220)	-	2145511..2146065 (-)	555	WP_000841373.1	type II secretion system protein	-
I5593_RS10225 (I5593_10225)	-	2146075..2146683 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
I5593_RS10230 (I5593_10230)	-	2146721..2147494 (-)	774	WP_000497298.1	TatD family hydrolase	-
I5593_RS10235 (I5593_10235)	-	2147512..2147853 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
I5593_RS10240 (I5593_10240)	-	2147865..2148845 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
I5593_RS10245 (I5593_10245)	kdsB	2148857..2149618 (-)	762	WP_000680698.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=509612 I5593_RS10210 WP_000594572.1 2144440..2145141(-) (xcpW) [Acinetobacter baumannii strain ATCC 17961]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=509612 I5593_RS10210 WP_000594572.1 2144440..2145141(-) (xcpW) [Acinetobacter baumannii strain ATCC 17961]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
TGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAACTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991