Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I5776_RS07700 Genome accession   NZ_CP065425
Coordinates   1558760..1561144 (+) Length   794 a.a.
NCBI ID   WP_246483950.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553760..1566144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS07675 (I5776_07670) - 1554541..1555203 (+) 663 WP_246483949.1 YitT family protein -
  I5776_RS07680 (I5776_07675) - 1555200..1555619 (+) 420 WP_202779976.1 Rrf2 family transcriptional regulator -
  I5776_RS07685 (I5776_07680) - 1555668..1556825 (+) 1158 WP_202779977.1 cysteine desulfurase family protein -
  I5776_RS07690 (I5776_07685) mnmA 1556835..1557950 (+) 1116 WP_202779978.1 tRNA 2-thiouridine(34) synthase MnmA -
  I5776_RS07695 (I5776_07690) - 1558067..1558735 (+) 669 WP_202779979.1 tetratricopeptide repeat protein -
  I5776_RS07700 (I5776_07695) recD2 1558760..1561144 (+) 2385 WP_246483950.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I5776_RS07705 (I5776_07700) - 1561187..1561705 (+) 519 WP_202779984.1 PRC-barrel domain-containing protein -
  I5776_RS07710 (I5776_07705) - 1561677..1561865 (+) 189 WP_202779985.1 hypothetical protein -
  I5776_RS07715 (I5776_07710) - 1561885..1562019 (+) 135 WP_202779986.1 YrzQ family protein -
  I5776_RS07720 (I5776_07715) - 1562102..1563181 (+) 1080 WP_202779987.1 AI-2E family transporter -
  I5776_RS07725 (I5776_07720) alaS 1563507..1566140 (+) 2634 WP_202779989.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89971.17 Da        Isoelectric Point: 4.8789

>NTDB_id=509440 I5776_RS07700 WP_246483950.1 1558760..1561144(+) (recD2) [Heyndrickxia vini strain JCM 19841]
MLEQQNTLNLFENDEKYVKGRHLVTIFHNEQNLYSVIRIRIDETNLETEEKEAVITGHFPKIHEQETYIFYGDMQEHPKF
GPQFQAKHFKKEIPQTKQGIITYLSSEMFSGIGKKTAERIVDVLGENAISKILDQPSLLDSIPKLPPEKAKTLYDKLIEH
QGLERVMIGLNQLGFGPQISMKIYQVYQEQSLDIIQKNPYQLVESVEGIGFGRADEIGKQLGIVGNHPDRIKAGCMYTLE
VECLQNGHVYMESKELLPQVKLLLEESQPISIEYSDISNEIIKLGEESKIVVENNNVYIPSLYFSEKGIVSNIQRILAQE
DYKDQFPESEFLLALGELEDRIGVQYAASQKEAIQTALMSPMMLLTGGPGTGKTTVIKGIVELYAELNGCSLEPKDYSKD
NPFPIILTAPTGRAAKRMSESTGLPAMTIHRLLGMTGQDDVGVDEDKQIDGKIVIVDEMSMVDTWLAHQLLKAMPEQIQV
ILVGDEDQLPSVGPGQVLKDLLRSKVIPTVQLTDIYRQEGGSSIIELAHDIKNGRIPQDVTKQQKDRSFIRCTTQQIPEV
IEKIVSSAKRKGYTQKDVQVLAPMYRGAAGIDRLNVLLQEIFNPNETGERKELSFGDIKYRIGDKVLQLVNQPEQHVFNG
DIGEIVSIFYAKENTEKQDLILISFDGIEVTYTRQDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAI
TRSKQSLIICGEQEAFRLGIERVDDQLRKTNLYDKLKILAEVTDVEKFIELSSETIMQIDPMIGMENVTPYDFM

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=509440 I5776_RS07700 WP_246483950.1 1558760..1561144(+) (recD2) [Heyndrickxia vini strain JCM 19841]
ATGTTGGAGCAGCAAAATACACTTAATTTATTTGAAAATGATGAGAAATATGTAAAAGGCCGACATCTTGTCACGATTTT
CCATAATGAACAAAACTTATATTCAGTTATTCGAATAAGAATTGATGAAACCAATTTAGAAACAGAAGAGAAAGAGGCAG
TCATTACTGGACATTTCCCGAAAATACATGAGCAGGAAACCTATATTTTTTATGGGGATATGCAAGAACATCCTAAGTTC
GGACCTCAATTTCAAGCCAAACATTTTAAAAAAGAAATCCCACAAACGAAACAAGGAATTATTACTTATCTTTCAAGTGA
AATGTTCAGTGGAATCGGAAAAAAAACAGCAGAACGTATTGTAGATGTATTAGGAGAAAATGCAATAAGTAAAATTTTGG
ACCAACCATCCTTGCTTGATTCGATTCCCAAATTACCTCCTGAAAAAGCAAAAACATTATATGATAAATTAATTGAACAT
CAAGGACTAGAGCGAGTAATGATTGGTTTAAATCAATTAGGGTTTGGTCCCCAAATTTCAATGAAAATTTATCAAGTATA
TCAGGAACAATCATTAGACATTATTCAAAAGAATCCGTATCAATTAGTCGAATCAGTGGAAGGCATTGGATTTGGTCGTG
CTGATGAAATAGGAAAGCAATTAGGTATTGTTGGGAATCATCCAGACAGAATAAAAGCGGGTTGTATGTATACGCTTGAG
GTAGAATGTTTGCAAAATGGCCATGTCTATATGGAATCAAAAGAACTTTTGCCCCAAGTAAAATTATTGTTAGAGGAATC
CCAACCTATTTCCATTGAATACTCAGATATTTCTAATGAGATTATCAAACTTGGCGAAGAGAGCAAAATTGTTGTAGAAA
ACAATAATGTATATATCCCTTCTTTATATTTTTCTGAAAAAGGTATTGTATCAAATATCCAGCGCATTTTGGCGCAGGAG
GACTATAAGGATCAATTTCCAGAATCCGAATTTTTACTTGCCTTAGGGGAACTTGAAGACCGAATCGGTGTTCAATATGC
CGCCTCGCAAAAGGAGGCAATTCAAACCGCATTAATGTCTCCAATGATGCTCCTAACGGGTGGACCGGGTACAGGGAAGA
CAACAGTAATCAAAGGAATTGTTGAATTGTATGCAGAGCTAAATGGTTGTTCATTAGAGCCGAAAGATTATAGTAAGGAT
AACCCTTTCCCGATTATTTTAACTGCCCCTACAGGTAGGGCAGCGAAAAGAATGTCTGAATCGACAGGGTTACCGGCCAT
GACGATTCACCGCCTTTTAGGTATGACTGGACAGGATGATGTTGGCGTAGATGAGGACAAACAAATTGATGGAAAAATTG
TCATCGTCGATGAAATGTCGATGGTCGATACATGGCTGGCACATCAATTACTTAAAGCAATGCCAGAACAAATCCAAGTC
ATTTTAGTTGGAGATGAAGATCAACTTCCATCTGTTGGACCAGGTCAAGTGTTAAAAGATCTTTTACGATCAAAAGTGAT
TCCAACGGTTCAATTAACAGATATTTATCGTCAAGAAGGCGGTTCATCAATCATCGAATTAGCCCATGATATTAAAAATG
GACGAATCCCGCAAGATGTGACAAAACAACAAAAGGATCGATCATTCATCCGCTGCACCACTCAGCAAATTCCGGAAGTA
ATTGAAAAAATTGTATCAAGTGCAAAGCGAAAAGGGTATACACAGAAGGATGTACAAGTATTAGCACCAATGTACAGAGG
AGCAGCTGGTATTGATCGTTTGAATGTTTTATTACAGGAAATTTTTAACCCAAATGAAACGGGCGAGAGAAAAGAATTAA
GTTTCGGGGATATTAAGTATCGTATTGGTGATAAAGTATTACAGCTTGTTAATCAACCGGAACAACATGTTTTCAATGGT
GATATTGGTGAAATTGTATCGATTTTTTATGCGAAAGAAAATACTGAAAAACAAGATTTAATACTTATTTCATTTGATGG
TATAGAAGTAACATATACACGACAGGATTTTAACCAGTTTACACATGCATACTGTTGTTCAATCCATAAATCACAAGGAA
GCGAATTTCCGATCGTTATTCTGCCTGTTGTAAAAAGTTATTATAGGATGCTCAGAAGAAATTTATTATATACAGCAATC
ACGAGAAGCAAACAATCATTAATTATTTGTGGTGAACAAGAAGCTTTTCGATTAGGAATAGAACGGGTAGATGACCAATT
AAGAAAAACAAATCTCTACGATAAATTGAAAATTTTAGCAGAAGTTACTGATGTTGAAAAGTTCATCGAATTATCAAGTG
AAACCATTATGCAAATTGACCCAATGATAGGAATGGAAAACGTTACACCTTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-657)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.957

100

0.61