Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I5776_RS07595 Genome accession   NZ_CP065425
Coordinates   1536541..1538910 (+) Length   789 a.a.
NCBI ID   WP_202779955.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531541..1543910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS07580 (I5776_07575) spoVB 1531998..1533542 (-) 1545 WP_202779949.1 stage V sporulation protein B -
  I5776_RS07585 (I5776_07580) - 1533652..1533963 (+) 312 WP_202779951.1 post-transcriptional regulator -
  I5776_RS07590 (I5776_07585) secDF 1534126..1536387 (+) 2262 WP_202779953.1 protein translocase subunit SecDF -
  I5776_RS07595 (I5776_07590) recJ 1536541..1538910 (+) 2370 WP_202779955.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I5776_RS07600 (I5776_07595) - 1538901..1539413 (+) 513 WP_202779957.1 adenine phosphoribosyltransferase -
  I5776_RS07605 (I5776_07600) - 1539651..1541840 (+) 2190 WP_202779958.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  I5776_RS07610 (I5776_07605) dtd 1541857..1542294 (+) 438 WP_202779960.1 D-aminoacyl-tRNA deacylase -
  I5776_RS07615 (I5776_07610) - 1542571..1543830 (-) 1260 WP_202779962.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89123.92 Da        Isoelectric Point: 5.0667

>NTDB_id=509439 I5776_RS07595 WP_202779955.1 1536541..1538910(+) (recJ) [Heyndrickxia vini strain JCM 19841]
MLKSKTRWIVQKTDENAIEHLVKELNITPLVAALLVNRGMTEIEEARNFIFSEGEDFHDPFLLHSMEKAVKRIRQAIDEG
EQILVYGDYDADGVTSTSVMITVLRDLGANVDFYIPNRFTEGYGPNEEAFRWASSIGIKLIITVDTGIAAIHEANIAEEL
GIDLIITDHHEPGPILPGALAIVHPNHPESIYPFKELAGVGVAFKVAHALYGRVPEHLVDLASIGTIADLVPLRGENRLI
VKHGLKKLAVTERPGLQALFEITKTKQSDINEETIGFVIGPRLNAAGRLDSADPAVELLLSNEQQEALNIAKEIDEMNKE
RQAIVNEITNEAIEMVENDPDLKDSHVLVIGKEGWNAGVIGIVASRLVDKFYRPTIVLSYDRTTNLAKGSARSIAGFDLF
RNLSTCRDILPHFGGHTMAAGMTLNIDDVGDLRLRLNELAREILTKEDFVPLTAIDAVIPLEDIHLESIQQLRLLEPYGM
ANPKPKVLVENVSIQQIRQIGADHKHLKVILEKSGIQLDGVGFGLGNYVQDISPLATVSVIGELAINEWNNNRKPQIFLK
DIQINEWQLFDVRGNRPLKKWIKDVPDTNSFFIVFNEETISKIPNDEINGKVIHLTDLDEAGMDDMSGGNIVLLDFPPNK
EKIEALIKKYNPSRIYTYFYQRQNHFFSTIPTRDHFKWFYAFLRKRGPFNVQKFGKELAAHRGWSLETIDFMSKVFFELD
FVTIKNGLISLNPTTSKRDLLESTTYQEKLEKIKLENELLFSSYQDLKSWFDERMTCSEKLEEETKQWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=509439 I5776_RS07595 WP_202779955.1 1536541..1538910(+) (recJ) [Heyndrickxia vini strain JCM 19841]
ATGTTAAAGTCAAAGACCCGTTGGATTGTACAGAAAACAGATGAAAATGCAATAGAACATCTCGTAAAAGAGTTAAACAT
TACTCCGCTAGTAGCCGCATTATTGGTTAATCGTGGAATGACTGAAATAGAAGAAGCCCGTAACTTTATATTCAGTGAAG
GGGAGGATTTTCATGATCCTTTTCTCCTTCATAGTATGGAAAAAGCAGTTAAAAGAATTCGCCAAGCAATTGATGAAGGC
GAACAAATTTTGGTATATGGCGATTATGACGCAGATGGTGTGACAAGTACTTCTGTTATGATAACTGTGTTGCGTGATTT
AGGTGCGAATGTTGATTTTTATATACCAAACCGATTTACGGAAGGCTACGGTCCAAATGAAGAAGCATTTCGCTGGGCTT
CATCGATTGGAATTAAGCTTATTATAACGGTCGATACTGGAATAGCAGCTATACATGAGGCAAACATTGCAGAAGAACTA
GGTATAGACTTAATCATTACGGATCATCATGAACCAGGTCCAATCTTGCCAGGTGCCTTGGCAATCGTTCATCCGAATCA
CCCCGAAAGCATCTATCCATTTAAAGAACTAGCTGGTGTCGGTGTGGCGTTTAAAGTTGCACATGCACTATATGGACGTG
TTCCGGAACATTTGGTAGATTTGGCTTCAATAGGAACAATCGCAGATTTAGTTCCTTTGCGGGGAGAAAACCGGTTGATC
GTTAAACATGGTCTAAAAAAATTAGCCGTAACTGAGCGGCCGGGATTACAGGCATTATTTGAAATTACCAAAACAAAGCA
ATCAGATATAAATGAGGAAACAATCGGATTCGTCATCGGTCCACGCTTAAATGCTGCAGGTAGATTGGATAGTGCTGATC
CTGCTGTAGAATTACTTTTGAGTAATGAGCAACAAGAAGCATTAAATATTGCAAAAGAAATTGATGAAATGAATAAAGAA
CGCCAGGCTATCGTCAATGAAATAACGAATGAAGCGATAGAAATGGTTGAAAATGACCCTGATTTAAAAGATAGTCATGT
ATTAGTAATCGGTAAAGAGGGCTGGAATGCAGGGGTTATCGGAATTGTTGCATCCCGATTAGTTGATAAGTTTTATCGTC
CAACTATCGTATTGAGTTATGATCGAACCACGAATTTGGCAAAGGGGTCCGCACGCAGTATTGCAGGATTTGATTTGTTT
AGAAATTTATCTACCTGTCGCGATATTTTACCCCACTTTGGTGGGCACACGATGGCAGCTGGAATGACGTTAAATATAGA
TGATGTTGGTGATTTGCGTTTGCGTTTAAACGAGTTAGCACGTGAAATCCTAACGAAGGAGGACTTTGTACCTTTAACTG
CAATTGATGCTGTTATTCCGTTAGAAGATATTCATCTTGAATCGATTCAACAACTACGATTGCTTGAACCATATGGGATG
GCAAATCCTAAGCCGAAAGTATTAGTTGAGAATGTGTCAATCCAGCAAATTCGCCAAATTGGTGCAGATCATAAACATTT
AAAAGTTATTCTTGAAAAGTCAGGTATCCAATTGGATGGAGTTGGATTTGGGTTAGGCAATTATGTGCAAGATATTTCTC
CACTAGCTACCGTTTCCGTAATAGGTGAATTAGCCATCAATGAATGGAATAATAATCGAAAACCGCAAATCTTTTTAAAA
GATATACAAATAAACGAGTGGCAACTTTTCGATGTTCGCGGGAATAGACCATTGAAAAAATGGATTAAAGATGTTCCAGA
TACAAATAGCTTCTTTATTGTTTTTAATGAAGAAACAATAAGCAAAATTCCTAATGACGAAATAAATGGTAAGGTAATTC
ATTTGACCGATTTAGATGAGGCAGGAATGGATGATATGAGTGGTGGAAACATCGTCTTACTTGATTTCCCACCTAATAAA
GAAAAAATAGAAGCATTAATTAAAAAATATAATCCATCCAGAATTTATACCTATTTCTACCAAAGGCAAAACCACTTTTT
TAGTACGATTCCGACTCGAGATCATTTTAAATGGTTCTATGCTTTTTTGAGGAAGCGTGGGCCATTTAATGTCCAAAAGT
TTGGGAAAGAATTAGCGGCGCATCGTGGTTGGTCGTTAGAAACAATTGATTTTATGTCAAAGGTGTTTTTTGAATTAGAT
TTTGTTACAATAAAGAATGGGCTTATTTCACTAAATCCCACTACATCGAAAAGGGACTTATTGGAATCTACAACCTATCA
AGAAAAGTTAGAAAAAATTAAGTTGGAAAATGAATTGTTATTTTCATCCTATCAAGACCTAAAATCATGGTTCGATGAAA
GAATGACGTGTTCTGAGAAGCTTGAGGAGGAAACAAAGCAATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.986

99.747

0.529