Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAIN_RS07340 Genome accession   NC_022244
Coordinates   1475963..1476751 (-) Length   262 a.a.
NCBI ID   WP_003026125.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470963..1481751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS07320 (SAIN_1422) gatA 1471297..1472763 (-) 1467 WP_021002003.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SAIN_RS07325 (SAIN_1423) gatC 1472763..1473065 (-) 303 WP_003026120.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SAIN_RS07330 (SAIN_1424) aspS 1473142..1474881 (-) 1740 WP_021002004.1 aspartate--tRNA ligase -
  SAIN_RS07335 (SAIN_1425) - 1475388..1475963 (-) 576 WP_021002005.1 cysteine hydrolase family protein -
  SAIN_RS07340 (SAIN_1426) codY 1475963..1476751 (-) 789 WP_003026125.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SAIN_RS07345 (SAIN_1427) - 1476916..1478130 (-) 1215 WP_021002006.1 pyridoxal phosphate-dependent aminotransferase -
  SAIN_RS07350 (SAIN_1428) - 1478282..1478734 (+) 453 WP_020999785.1 universal stress protein -
  SAIN_RS07355 (SAIN_1429) - 1478780..1480168 (-) 1389 WP_021002007.1 Cof-type HAD-IIB family hydrolase -
  SAIN_RS07360 (SAIN_1430) - 1480233..1481195 (+) 963 WP_021002008.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29737.06 Da        Isoelectric Point: 5.0797

>NTDB_id=50926 SAIN_RS07340 WP_003026125.1 1475963..1476751(-) (codY) [Streptococcus anginosus C1051]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPINHDLSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=50926 SAIN_RS07340 WP_003026125.1 1475963..1476751(-) (codY) [Streptococcus anginosus C1051]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGATTACAGGATGAATTACC
TTACAATGCAATTACCCAGCAGTTAGCTGAAATTATGGATTGCAATGCCTGCATTGTAAACAGTAAAGGGCGTCTTTTGG
GGTATTTCATGCGCTACAAGACGAACAATGACCGTGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAATATGTT
CGCACAGCGAATTTAATGTATGACACAGAAGCCAATCTTCCTATCAATCATGATTTGTCAATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCTATCCATGTTTCAGGGATTCGCTTAGGAACTTTGATTGTTTGGC
GCAATGATAAAGAATTTGATGATGATGATTTGATTTTGGTTGAAATTGCAAGTACAGTGGTTGGTATTCAGTTGCTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGTCGCAGAACAGCTGTAACCATGGCTGTAAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAATTAAACGGTAATGAAGGTCAATTGACAGCATCGGTCATTGCGGATCGTA
TTGGTATTACTCGCTCGGTGATTGTCAATGCTCTGCGTAAACTAGAGAGTGCAGGCATTATTGAAAGTCGTTCTTTGGGA
ATGAAAGGAACCTATCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAAGAGAGATTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.45

100

0.615
  codY Bacillus subtilis subsp. subtilis str. 168

50.813

93.893

0.477