Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I5P94_RS05955 Genome accession   NZ_CP065382
Coordinates   1218320..1220131 (-) Length   603 a.a.
NCBI ID   WP_223389618.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain Fp944     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1213320..1225131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P94_RS05940 - 1213870..1214790 (-) 921 WP_005945749.1 AAA family ATPase -
  I5P94_RS05945 - 1214992..1217022 (-) 2031 WP_223389608.1 FAD-binding protein -
  I5P94_RS05950 - 1217183..1218106 (+) 924 WP_223389616.1 LysR family transcriptional regulator -
  I5P94_RS05955 rcrQ 1218320..1220131 (-) 1812 WP_223389618.1 ABC transporter ATP-binding protein Regulator
  I5P94_RS05960 - 1220133..1222439 (-) 2307 WP_223389620.1 ABC transporter ATP-binding protein -
  I5P94_RS05965 - 1222436..1222942 (-) 507 WP_194173936.1 MarR family winged helix-turn-helix transcriptional regulator -
  I5P94_RS05970 - 1223187..1224128 (+) 942 WP_263287123.1 Na/Pi cotransporter family protein -
  I5P94_RS05975 - 1224209..1224865 (+) 657 WP_097775336.1 sortase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66797.18 Da        Isoelectric Point: 6.7644

>NTDB_id=509047 I5P94_RS05955 WP_223389618.1 1218320..1220131(-) (rcrQ) [Faecalibacterium prausnitzii strain Fp944]
MPRPGRMTTERAKDFKGTLLQLVRNLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRKQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPGCINGQVTFSHVRFGYTPDKTVIRDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=509047 I5P94_RS05955 WP_223389618.1 1218320..1220131(-) (rcrQ) [Faecalibacterium prausnitzii strain Fp944]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCAACCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGTCCCAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCCCAGAAAGTCTGCTACGACTTCCGCAAGCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCGGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCACAGCAGG
CCATTCTGGGCGTTGTGAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGGCCCGCCGGGCCGACCCCGGCTGCATCAACGGTCAGGTGACATTCAGTCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCGCGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGACTGGATGCTACCGACGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCTGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAAGACGCTTCTAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGCGTGGATACCCGTACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATCGCACACCGTCTTTCCACCATC
CGGGATGCCGACCTCATCCTTGTAATGCGAGATGGCGATATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.767

97.347

0.494