Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I5P99_RS07420 Genome accession   NZ_CP065380
Coordinates   1545574..1547385 (+) Length   603 a.a.
NCBI ID   WP_223383817.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain Fp28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540574..1552385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P99_RS07400 - 1541580..1542281 (+) 702 WP_156072057.1 endonuclease III domain-containing protein -
  I5P99_RS07405 - 1542278..1542604 (+) 327 WP_156073886.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I5P99_RS07410 - 1542770..1543270 (+) 501 WP_223383815.1 MarR family winged helix-turn-helix transcriptional regulator -
  I5P99_RS07415 - 1543263..1545572 (+) 2310 WP_223383816.1 ABC transporter ATP-binding protein -
  I5P99_RS07420 rcrQ 1545574..1547385 (+) 1812 WP_223383817.1 ABC transporter ATP-binding protein Regulator
  I5P99_RS07425 - 1547513..1548274 (+) 762 WP_156058160.1 AzlC family ABC transporter permease -
  I5P99_RS07430 - 1548271..1548582 (+) 312 WP_223383818.1 AzlD domain-containing protein -
  I5P99_RS07435 - 1548585..1549445 (+) 861 WP_223383819.1 SDR family oxidoreductase -
  I5P99_RS07440 spoIVA 1549522..1551018 (-) 1497 WP_097771913.1 stage IV sporulation protein A -
  I5P99_RS07445 - 1551204..1552217 (+) 1014 WP_223383820.1 sodium ion-translocating decarboxylase subunit beta -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66694.20 Da        Isoelectric Point: 6.4070

>NTDB_id=509019 I5P99_RS07420 WP_223383817.1 1545574..1547385(+) (rcrQ) [Faecalibacterium prausnitzii strain Fp28]
MPRPGKQTTERAKDFKGTLRQLLSALSQYKLSLIVVMVFAILSTIFNIAGPKILAKATTALATGWIAKLRGIGSIDFAYI
GKILLILLAMYLCSAAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSVT
QLITSITTMIGVLIMMLSISPKMTLIALLILPVSLVLVMLVVRFSQKYFKAQQATLGVVNGQVEEVYSGHNVIKAFNREA
AVLEDFNAANDKLFESAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGSIFAANGIITIGDIQAFIQYVRNFTQPIQQLAQV
SNMLQSMAAAAERVFEFLNEPEEAQLADPARRADPACIDGQVTFDHVRFGYVPEKTIIHDFSCKVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDIRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILILDEATSSVDTRTEQRIQTAMDNLMRGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=509019 I5P99_RS07420 WP_223383817.1 1545574..1547385(+) (rcrQ) [Faecalibacterium prausnitzii strain Fp28]
ATGCCGAGACCCGGAAAACAGACCACCGAGCGCGCCAAGGATTTCAAGGGCACTCTGCGGCAGCTCCTCAGCGCATTGAG
CCAGTATAAGCTCTCCCTCATCGTTGTGATGGTCTTTGCCATCCTTTCCACCATTTTCAATATCGCAGGCCCCAAAATTC
TGGCCAAGGCCACCACGGCCCTTGCCACCGGCTGGATCGCCAAGCTGCGGGGGATCGGCAGCATCGACTTTGCCTACATC
GGCAAGATCCTGCTCATCCTGCTGGCCATGTACCTCTGCTCCGCAGCATTCAGCTTTATCCAGGGCTGGCTGATGACCGG
CCTTTCCCAGAAGGTCTGCTACGATTTCCGCCGCCAGATCAGCGAGAAGATCAACCGCCTGCCGCTGGCCTACTTTGAAA
AGCGGACGGTCGGCGAGGTGCTCTCCCGCATCACCAACGATGTGGACACCCTGGGCCAGAGCCTGAACCAGAGCGTGACC
CAGCTCATCACCAGCATTACCACCATGATCGGCGTGCTGATCATGATGCTGTCCATCAGCCCCAAAATGACTCTGATCGC
ACTGCTCATCCTGCCTGTTTCTCTGGTACTGGTGATGCTGGTGGTCAGGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCACCCTGGGTGTTGTGAACGGTCAGGTGGAGGAGGTCTACTCCGGCCACAACGTCATCAAGGCCTTCAACCGGGAGGCC
GCCGTGCTGGAGGACTTCAACGCCGCCAACGACAAGCTGTTTGAATCTGCCTGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GCAGCCCATTATGAACTTTGTGGGCAACCTGGGCTATGTGGCTGTTGCCATCGTCGGCAGCATCTTTGCCGCCAACGGCA
TCATCACCATCGGCGATATCCAGGCTTTTATCCAGTATGTCCGCAATTTCACCCAGCCCATCCAGCAGCTGGCACAGGTG
TCCAACATGCTGCAGAGCATGGCCGCCGCTGCCGAGCGCGTGTTCGAGTTCCTGAACGAGCCCGAAGAGGCTCAGCTGGC
CGACCCTGCCCGCCGGGCAGACCCTGCCTGCATCGATGGTCAGGTCACCTTTGACCATGTCCGGTTCGGTTATGTGCCCG
AAAAGACCATCATCCACGATTTCAGCTGTAAGGTGCAGCCCGGCCAGAAGGTCGCCATCGTCGGCCCCACCGGTGCCGGC
AAGACCACCATGGTCAAGCTGCTCATGCGGTTCTACGATGTAGATTCCGGCTCCATCACCTTGAACGGCCACGACATCCG
CGACTTTGACCGCAGTGCCCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACCTGGTTGTTCAAGGGCACCATCATGG
AGAATATCCGCTATGGCCGTCTGGATGCCACCGACGAAGAGGTCATTGCCGCCGCCAAAGCCGCCAATGCCGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCTTCCAACGTCAGTCAGGGCCAGAAGCAGCTGCT
GACGATCGCCCGGGCCATTCTGGCCGACAACCGCATCCTGATCCTGGACGAGGCCACCAGCAGTGTGGACACCCGTACCG
AACAGCGCATCCAGACTGCTATGGACAACCTGATGCGGGGCCGTACCAGCTTTGTCATCGCCCACCGCCTGTCCACCATC
AGGGATGCCGACCTGATCCTGGTCATGCGGGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTCATTGAGGCCGG
CGGTTTCTACGCTGACCTGTACAACAGCCAGTTTGAGGATGTTGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(33-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.618

97.347

0.502