Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I5P96_RS06900 Genome accession   NZ_CP065377
Coordinates   1390610..1392421 (-) Length   603 a.a.
NCBI ID   WP_223383666.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain Fp77     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385610..1397421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P96_RS06860 - 1385836..1386825 (-) 990 WP_223383662.1 nucleoid-associated protein -
  I5P96_RS06865 - 1386975..1387079 (+) 105 Protein_1340 low molecular weight phosphotyrosine protein phosphatase -
  I5P96_RS06870 - 1387089..1387676 (+) 588 WP_223383663.1 pentapeptide repeat-containing protein -
  I5P96_RS06880 - 1388169..1388453 (+) 285 WP_118552849.1 DUF2508 family protein -
  I5P96_RS06885 - 1388572..1389420 (-) 849 WP_223383664.1 SDR family oxidoreductase -
  I5P96_RS06890 - 1389426..1389737 (-) 312 WP_118552850.1 AzlD domain-containing protein -
  I5P96_RS06895 - 1389734..1390477 (-) 744 WP_223383665.1 AzlC family ABC transporter permease -
  I5P96_RS06900 rcrQ 1390610..1392421 (-) 1812 WP_223383666.1 ABC transporter ATP-binding protein Regulator
  I5P96_RS06905 - 1392423..1394756 (-) 2334 WP_223383667.1 ABC transporter ATP-binding protein -
  I5P96_RS06910 - 1394749..1395246 (-) 498 WP_223383668.1 MarR family winged helix-turn-helix transcriptional regulator -
  I5P96_RS06915 - 1395398..1395904 (-) 507 WP_223383669.1 DUF2812 domain-containing protein -
  I5P96_RS06920 - 1395907..1396218 (-) 312 WP_223383670.1 PadR family transcriptional regulator -
  I5P96_RS06925 - 1396347..1396676 (-) 330 WP_097792338.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I5P96_RS06930 - 1396688..1397371 (-) 684 WP_223383671.1 endonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66495.91 Da        Isoelectric Point: 6.1962

>NTDB_id=508983 I5P96_RS06900 WP_223383666.1 1390610..1392421(-) (rcrQ) [Faecalibacterium prausnitzii strain Fp77]
MPRPGRQTTERAKDFKGTLLQLLKTMGAYKISLIVVIVFAILSTIFNIAGPKILAKATTALATGWIARLRGVGSIDFGYI
GKILLILLAMYLCSAAFSFVQGWLMTGLSQKVCYDFRRQISEKIDRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSVT
QLITSVTTMIGVLLMMLSISPRMTLIALLILPVSLALVLLVVKFSQKYFKAQQATLGVVNGQVEEVYSGHSVIKAFNREA
AVLADFNTANDKLFESAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGSVFAANGVITIGDIQAFIQYVKNFTQPIQQLAQV
SNMLQSMAAAAERVFEFLNEPEEAQLADPARRADPACIDGQVTFDHVRFGYVPEKTIIHDFSCTVNPGEKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILILDEATSSVDTRTEQRIQTAMDNLMRGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEKGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=508983 I5P96_RS06900 WP_223383666.1 1390610..1392421(-) (rcrQ) [Faecalibacterium prausnitzii strain Fp77]
ATGCCGAGACCCGGACGCCAGACGACGGAACGCGCCAAGGATTTCAAGGGCACGCTGCTGCAGCTGCTCAAGACCATGGG
CGCATATAAGATCTCCCTCATCGTCGTCATCGTTTTCGCCATCCTCTCCACCATCTTCAACATCGCAGGCCCGAAGATCC
TGGCCAAGGCCACCACGGCCCTTGCCACCGGCTGGATCGCCAGACTGCGCGGCGTTGGCAGCATCGACTTTGGCTACATC
GGCAAAATTCTGCTCATCCTGCTGGCCATGTACCTCTGCTCGGCTGCATTCAGCTTCGTTCAGGGCTGGCTGATGACCGG
CCTTTCGCAGAAGGTGTGCTACGACTTCCGCCGCCAGATCAGCGAGAAGATCGACCGCCTGCCCCTCGCCTACTTTGAGA
AGCGCACCGTCGGTGAGGTGCTCTCCCGCATCACCAACGACGTCGATACTCTGGGCCAGAGCCTGAACCAGAGCGTCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGTGTGCTCCTCATGATGCTCTCCATCAGCCCCAGAATGACCCTCATCGC
CCTGCTCATCCTGCCCGTTTCGCTGGCGCTTGTGCTGCTGGTGGTCAAATTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCACTCTGGGCGTCGTGAACGGCCAGGTGGAGGAAGTCTACTCCGGCCACAGCGTCATCAAGGCATTCAACCGCGAAGCC
GCTGTGCTGGCCGACTTCAACACCGCAAACGACAAGCTGTTCGAATCCGCCTGGAAGAGTCAGTTTCTCTCCGGCCTGAT
GCAGCCCATCATGAACTTTGTGGGCAATCTGGGCTATGTGGCCGTGGCCATCGTCGGCAGCGTGTTTGCCGCCAACGGCG
TCATCACCATCGGCGACATTCAGGCCTTCATCCAGTATGTCAAGAACTTCACCCAGCCCATCCAGCAGCTCGCGCAGGTG
TCGAACATGCTGCAGAGCATGGCCGCTGCGGCGGAGCGCGTCTTCGAGTTCCTGAACGAGCCGGAAGAAGCGCAGCTCGC
CGACCCGGCCCGCCGGGCAGACCCCGCCTGCATCGACGGTCAGGTCACCTTTGACCACGTCCGGTTCGGCTATGTGCCCG
AAAAGACCATCATCCACGATTTCAGCTGCACCGTGAACCCCGGCGAGAAGGTCGCCATCGTAGGCCCCACCGGCGCGGGC
AAGACCACCATGGTCAAGCTGCTGATGCGGTTCTACGATGTGGATTCCGGTTCCATCACCCTGAACGGCCACGATGTGCG
CGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACCTGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGGTACGGCCGCCTCGACGCCACCGACGAAGAAGTCATCGCCGCAGCCAAGGCTGCCAACGCAGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTCAGCCAGGGCCAGAAGCAGCTGCT
GACCATTGCCCGCGCCATCCTGGCCGACAACCGCATCCTGATCCTGGATGAGGCCACCAGCAGCGTGGATACCCGCACCG
AACAGCGCATCCAGACCGCAATGGACAACCTGATGCGCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTGTCCACCATC
CGGGACGCAGACCTCATCCTTGTGATGCGGGACGGCGACATCGTCGAGCAGGGCACCCATGACCAGCTCATCGAAAAGGG
CGGCTTCTACGCAGACCTGTACAACAGCCAGTTCGAAGACGTTGTGGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(33-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.256

97.347

0.489