Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DGO_RS15035 Genome accession   NC_017790
Coordinates   3135235..3136344 (+) Length   369 a.a.
NCBI ID   WP_226991395.1    Uniprot ID   -
Organism   Deinococcus gobiensis I-0     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3130235..3141344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS15015 (DGo_CA2953) rny 3130579..3132297 (+) 1719 WP_014686360.1 ribonuclease Y -
  DGO_RS15020 (DGo_CA2954) - 3132499..3132960 (+) 462 WP_043803957.1 hypothetical protein -
  DGO_RS15025 (DGo_CA2955) - 3133045..3133704 (+) 660 WP_014686362.1 response regulator transcription factor -
  DGO_RS15030 (DGo_CA2956) - 3133766..3135238 (+) 1473 WP_014686363.1 sensor histidine kinase -
  DGO_RS15035 (DGo_CA2957) dprA 3135235..3136344 (+) 1110 WP_226991395.1 DNA-processing protein DprA Machinery gene
  DGO_RS15040 (DGo_CA2958) - 3136363..3136635 (-) 273 WP_014686365.1 hypothetical protein -
  DGO_RS15045 (DGo_CA2959) - 3136724..3137011 (-) 288 WP_014686366.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38647.25 Da        Isoelectric Point: 7.5229

>NTDB_id=50898 DGO_RS15035 WP_226991395.1 3135235..3136344(+) (dprA) [Deinococcus gobiensis I-0]
MTRRAAPPAPELFPSPDPAELLALLTLRFTPQLGPRRTEALRRHFGTARAALGASLAERRAVPGLDARSLAAIGTPKPAE
QAQAELEKAAGAGVRVLGRGLAGYPEALDALGDPPAVLWVRGEWPEFPAVPRALGVVGTRAVSPSARSLTRQISADLARA
GVLVVSGLARGVDTEAHSAAVEAGGPSVAVLGSAVDHIYPSENVPLSRQLTLVSEYPLGTPPAQHHFPTRNRLIAALSAG
SLIVEGELKSGSMITATHALDCGRTVFAVPGRAGDPRAAGPHRLLREGAVLTESAQDILDELGWGTAPAAPQLDLPPEQT
RVLASLTRPTTLDDLQTQVRLPLPDLQTALVMLQLMGLVEEAGGRWARR

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=50898 DGO_RS15035 WP_226991395.1 3135235..3136344(+) (dprA) [Deinococcus gobiensis I-0]
GTGACGCGCCGCGCTGCCCCGCCCGCCCCCGAGCTGTTCCCGTCCCCGGACCCGGCCGAGCTGCTCGCGCTGCTGACCCT
GCGCTTCACGCCGCAGCTCGGTCCCCGGCGTACCGAGGCCCTGCGCCGCCACTTCGGTACGGCCCGCGCGGCCCTGGGGG
CGTCCCTGGCCGAGCGGCGCGCCGTGCCCGGTCTGGACGCCCGCAGCCTCGCGGCCATCGGCACCCCAAAGCCGGCCGAG
CAGGCCCAGGCCGAACTGGAGAAGGCCGCCGGAGCGGGCGTAAGGGTGCTGGGCCGGGGTCTGGCGGGCTACCCCGAGGC
CCTCGACGCGCTGGGCGACCCGCCCGCGGTGCTGTGGGTACGCGGCGAATGGCCCGAATTTCCGGCGGTGCCCCGCGCGC
TGGGCGTCGTGGGCACCCGCGCGGTCAGTCCCTCTGCCCGCTCGCTGACCCGCCAGATTTCGGCCGACCTCGCGCGGGCC
GGCGTGCTGGTGGTCAGCGGACTGGCGCGCGGCGTGGACACCGAGGCCCACTCGGCGGCGGTGGAGGCGGGCGGCCCCAG
CGTGGCCGTGCTGGGCAGCGCCGTGGACCACATCTATCCCAGCGAGAACGTCCCGCTGTCGCGGCAGCTCACCCTGGTCA
GCGAGTACCCGCTGGGCACGCCGCCCGCCCAGCACCACTTTCCGACCCGCAACCGCCTCATCGCGGCGCTGTCGGCCGGG
TCGCTGATCGTGGAGGGCGAGCTGAAGTCGGGGTCCATGATTACGGCGACGCACGCGCTGGACTGTGGCCGCACCGTATT
CGCCGTGCCGGGCCGCGCCGGAGACCCCCGCGCCGCCGGGCCACACCGCCTGCTGCGGGAGGGCGCCGTCCTGACCGAGT
CGGCGCAGGACATTCTCGACGAGCTGGGCTGGGGAACGGCCCCCGCCGCGCCGCAGCTCGACCTGCCGCCCGAGCAGACG
CGGGTGCTCGCGTCCCTGACCCGGCCCACCACCCTGGACGACCTCCAGACCCAGGTGCGTCTACCCCTGCCCGACCTCCA
GACCGCGCTGGTGATGCTTCAGCTCATGGGCCTGGTCGAGGAGGCCGGGGGGCGCTGGGCGAGGCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-364)

DNA recombination-mediator protein A (DNA_processg_A)

(92-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.806

95.122

0.645

Multiple sequence alignment