Detailed information NTG0050896

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DGO_RS13880
• Genome accession: NC_017790
• Coordinates: 2891538..2892686 (+)
• Length: 382 a.a.
• NCBI ID: WP_043802532.1
• Uniprot ID: -
• Organism: Deinococcus gobiensis I-0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2886538..2897686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGO_RS13860 (DGo_CA2731)	-	2887634..2888851 (+)	1218	WP_014686138.1	adenylosuccinate synthase	-
DGO_RS13865 (DGo_CA2732)	folE	2888955..2889581 (+)	627	WP_050920822.1	GTP cyclohydrolase I FolE	-
DGO_RS13870 (DGo_CA2733)	msrP	2889723..2890706 (+)	984	WP_043802529.1	protein-methionine-sulfoxide reductase catalytic subunit MsrP	-
DGO_RS13875 (DGo_CA2734)	-	2890706..2891383 (+)	678	WP_083847303.1	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	-
DGO_RS13880 (DGo_CA2735)	pilD	2891538..2892686 (+)	1149	WP_043802532.1	prepilin peptidase	Machinery gene
DGO_RS23330	-	2892732..2892920 (-)	189	WP_145975337.1	hypothetical protein	-
DGO_RS13885 (DGo_CA2736)	-	2893066..2893773 (+)	708	WP_014686143.1	queuosine precursor transporter	-
DGO_RS13890 (DGo_CA2737)	-	2893786..2895654 (-)	1869	WP_014686144.1	menaquinone biosynthesis decarboxylase	-
DGO_RS13895 (DGo_CA2738)	-	2895823..2896584 (+)	762	WP_014686145.1	transporter substrate-binding domain-containing protein	-
DGO_RS13900 (DGo_CA2739)	-	2896657..2897328 (+)	672	WP_014686146.1	amino acid ABC transporter permease	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 39588.65 Da
• Isoelectric Point: 8.7493

>NTDB_id=50896 DGO_RS13880 WP_043802532.1 2891538..2892686(+) (pilD) [Deinococcus gobiensis I-0]
MSLDVLLVVFAGVFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHALAPRDLVPLGSWLALGGKCRYCRAPIKARYPV
VEALTGLGYAVIAALFPFTVYGAAPLGLMVLFTLLLVGSAIDLDTYTIPDELTLPGVALGLLFALVGVRGAAEALPTFAG
AVQGALLGAGVLVAIDLFGSWVLRRFRERQYPDLPIGYQQIALGLLAGAWLGPWGGLAVALVSAGVNAVARRVVRIPEVL
TLGGFLVSVAVASSGVGPGLVGAAQGGLAGAGATSLVAGLYWWWAHRARREDDAADDGAYDPSAMGFGDVKLAAVIGAFL
GWQNLLLAVVVAVFAGAVFGLVQAALKRGNRVKFGPYLALGAVVAMLWGQPLVGSYRALLGL

Nucleotide

• Length: 1149 bp

>NTDB_id=50896 DGO_RS13880 WP_043802532.1 2891538..2892686(+) (pilD) [Deinococcus gobiensis I-0]
GTGAGTCTCGACGTTCTTCTCGTGGTGTTCGCTGGCGTGTTCGGCCTGCTCGTCGGGTCGTTCTCGAACGTGCTGATCTG
GCGGTTGCCACGCGGCGAGAACATCGCCTTTCCGCCGAGCCACTGCCCGCACTGCGACCACGCCCTCGCGCCCAGGGACC
TCGTGCCGCTGGGCTCCTGGCTGGCGCTGGGGGGCAAGTGCCGCTACTGCCGCGCGCCCATCAAGGCCCGCTACCCGGTC
GTCGAGGCGCTGACGGGCCTGGGCTACGCGGTCATCGCGGCGCTCTTTCCCTTCACGGTGTACGGCGCGGCCCCCCTGGG
CCTGATGGTGCTGTTCACGCTGCTGCTGGTGGGCAGCGCCATCGACCTCGACACCTACACCATCCCCGACGAGCTGACGC
TGCCGGGCGTGGCGCTCGGGCTGCTGTTCGCGCTGGTCGGCGTGCGCGGCGCGGCCGAGGCGCTGCCCACCTTCGCCGGG
GCGGTGCAGGGCGCGCTGCTGGGGGCGGGGGTGCTCGTCGCCATCGACCTGTTCGGGTCGTGGGTGCTGCGGCGCTTCCG
CGAGCGGCAGTACCCCGACCTGCCCATCGGCTACCAGCAGATCGCGCTGGGGCTACTGGCCGGCGCGTGGCTGGGGCCCT
GGGGCGGTCTGGCGGTGGCCCTGGTGTCGGCGGGCGTGAACGCCGTGGCCCGGCGGGTCGTGCGGATTCCCGAAGTGCTC
ACGCTGGGCGGCTTTCTGGTCAGCGTGGCGGTCGCGAGCAGCGGCGTCGGCCCTGGCCTCGTCGGCGCGGCGCAGGGCGG
TCTGGCCGGGGCGGGGGCCACGTCGCTGGTCGCGGGCCTGTACTGGTGGTGGGCCCACCGCGCCCGGCGCGAGGACGACG
CGGCCGACGACGGCGCCTACGACCCCAGCGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCCGTGATCGGGGCCTTCCTG
GGCTGGCAGAACCTGCTGCTGGCGGTCGTGGTGGCCGTGTTCGCGGGGGCCGTGTTCGGACTGGTGCAGGCGGCCCTCAA
GCGGGGCAACCGGGTCAAGTTCGGCCCCTACCTCGCCCTGGGGGCGGTCGTGGCGATGCTGTGGGGCCAGCCGCTCGTCG
GCAGCTACCGGGCGCTGCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

• Type IV leader peptidase family (Peptidase_A24) (234-341)

• Type IV leader peptidase family (Peptidase_A24) (109-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	71.392	100	0.725