Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I0292_RS05160 Genome accession   NZ_CP065335
Coordinates   992678..995035 (+) Length   785 a.a.
NCBI ID   WP_099331304.1    Uniprot ID   -
Organism   Priestia megaterium strain Y11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 987678..1000035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0292_RS05140 (I0292_05125) cymR 989035..989451 (+) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -
  I0292_RS05145 (I0292_05130) - 989475..990617 (+) 1143 WP_099331306.1 cysteine desulfurase family protein -
  I0292_RS05150 (I0292_05135) mnmA 990724..991836 (+) 1113 WP_099331305.1 tRNA 2-thiouridine(34) synthase MnmA -
  I0292_RS05155 (I0292_05140) - 991994..992653 (+) 660 WP_013085089.1 tetratricopeptide repeat protein -
  I0292_RS05160 (I0292_05145) recD2 992678..995035 (+) 2358 WP_099331304.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I0292_RS05165 (I0292_05150) - 995177..995368 (+) 192 WP_013059292.1 hypothetical protein -
  I0292_RS05170 (I0292_05155) - 995394..995528 (+) 135 WP_013059291.1 YrzQ family protein -
  I0292_RS05175 (I0292_05160) - 995642..996703 (+) 1062 WP_028411681.1 AI-2E family transporter -
  I0292_RS05180 (I0292_05165) alaS 997092..999725 (+) 2634 WP_099331303.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88845.38 Da        Isoelectric Point: 5.0673

>NTDB_id=508530 I0292_RS05160 WP_099331304.1 992678..995035(+) (recD2) [Priestia megaterium strain Y11]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSKQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFTRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPVSEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSIRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=508530 I0292_RS05160 WP_099331304.1 992678..995035(+) (recD2) [Priestia megaterium strain Y11]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTTTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTTAATGAAGATGAAGTATACACATTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAATTTCATGTTGAGCAGTTTAAAAAAGAACTTCCGCAATCAAAGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCCGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAGGCTTTAGTAACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTACCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAACCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGTAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTACGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCCCAAACGCAATAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTTTAGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACTGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACCGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAATTATTGATTG
TGGATGAAGTATCGATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGGTCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCAAGGACAGCACATCACGAATGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGTTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCGCAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCTATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGT
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGGAATGAAGACAGCATTCGACAAAC
GAATTTACAGCCCCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637