Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2439_RS04250 Genome accession   NZ_CP065191
Coordinates   898013..898891 (+) Length   292 a.a.
NCBI ID   WP_196820010.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 893013..903891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS04220 (HIEAAJJG_00849) - 893183..894058 (+) 876 WP_012678111.1 F0F1 ATP synthase subunit gamma -
  I2439_RS04225 (HIEAAJJG_00850) atpD 894222..895628 (+) 1407 WP_115250842.1 F0F1 ATP synthase subunit beta -
  I2439_RS04230 (HIEAAJJG_00851) - 895641..896057 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  I2439_RS04235 - 896217..896453 (+) 237 WP_115250843.1 DUF1146 family protein -
  I2439_RS04240 (HIEAAJJG_00852) murA 896518..897789 (+) 1272 WP_037578679.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2439_RS04245 (HIEAAJJG_00853) - 897793..897981 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  I2439_RS04250 (HIEAAJJG_00854) endA 898013..898891 (+) 879 WP_196820010.1 DNA/RNA non-specific endonuclease Machinery gene
  I2439_RS04255 (HIEAAJJG_00855) - 898905..899063 (+) 159 WP_196820011.1 hypothetical protein -
  I2439_RS04260 (HIEAAJJG_00856) pheS 899800..900843 (+) 1044 WP_196820012.1 phenylalanine--tRNA ligase subunit alpha -
  I2439_RS04265 (HIEAAJJG_00857) pheT 901033..903438 (+) 2406 WP_196820013.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31847.02 Da        Isoelectric Point: 10.2312

>NTDB_id=507823 I2439_RS04250 WP_196820010.1 898013..898891(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MIKKKKDIRLLNAFLALLLVLGTGYLVGHDDLVADNPIKQVYQRILGSDTQQVGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPGNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=507823 I2439_RS04250 WP_196820010.1 898013..898891(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGATCAAAAAGAAGAAAGACATCAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGT
AGGACATGATGACCTAGTAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACACGCAGCAAGTCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
GGCCAGTCTCCCCTATGCCAATAATAAAACAAAGCTGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CTAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCCGGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGATATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGTAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCCTCTTCACAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524