Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMULJ23_RS08690 Genome accession   NC_017768
Coordinates   1796628..1797569 (-) Length   313 a.a.
NCBI ID   WP_014678247.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791628..1802569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS08675 (SMULJ23_1707) ptcA 1792930..1793949 (-) 1020 WP_002282737.1 putrescine carbamoyltransferase -
  SMULJ23_RS08680 (SMULJ23_1708) - 1794188..1795153 (+) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  SMULJ23_RS08685 (SMULJ23_1709) - 1795370..1795972 (-) 603 WP_002262735.1 nitroreductase family protein -
  SMULJ23_RS08690 (SMULJ23_1710) amiF 1796628..1797569 (-) 942 WP_014678247.1 ATP-binding cassette domain-containing protein Regulator
  SMULJ23_RS08695 (SMULJ23_1711) oppD 1797562..1798614 (-) 1053 WP_002297981.1 ABC transporter ATP-binding protein Regulator
  SMULJ23_RS08700 (SMULJ23_1712) - 1798624..1799655 (-) 1032 WP_002263989.1 ABC transporter permease -
  SMULJ23_RS08705 (SMULJ23_1713) - 1799666..1800580 (-) 915 WP_002262739.1 ABC transporter permease -
  SMULJ23_RS08710 (SMULJ23_1714) - 1800686..1802335 (-) 1650 WP_014678248.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35399.59 Da        Isoelectric Point: 7.0888

>NTDB_id=50782 SMULJ23_RS08690 WP_014678247.1 1796628..1797569(-) (amiF) [Streptococcus mutans LJ23]
MTENRKKLIEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDKGEIDFEGE
TISKLKGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFS
GGQRQRIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEI
GTSDEVYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 942 bp        

>NTDB_id=50782 SMULJ23_RS08690 WP_014678247.1 1796628..1797569(-) (amiF) [Streptococcus mutans LJ23]
ATGACTGAAAATCGTAAAAAACTAATTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATAAAGGAGAAATTGATTTCGAAGGTGAA
ACGATTTCAAAATTAAAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAG
CTTGAATAGTCGCATGAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACC
GTGACGCAAAAGTTCAGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCA
GGCGGTCAGCGTCAACGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTC
TGCTTTGGATGTCTCTATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGT
TCATTGCTCATGATTTATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATT
GGGACATCTGATGAGGTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCC
AGTTTTAGAACGTCAACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAA
TTACACCGGGGCATTTTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.839

99.042

0.543
  amiF Streptococcus thermophilus LMG 18311

54.516

99.042

0.54
  amiF Streptococcus salivarius strain HSISS4

54.516

99.042

0.54

Multiple sequence alignment