Detailed information NTG0507810

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: I2439_RS01600
• Genome accession: NZ_CP065191
• Coordinates: 307618..308553 (+)
• Length: 311 a.a.
• NCBI ID: WP_115250572.1
• Uniprot ID: A0A380JNN6
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ46
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 302618..313553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2439_RS01580 (HIEAAJJG_00310)	-	302777..304435 (+)	1659	WP_037580359.1	peptide ABC transporter substrate-binding protein	-
I2439_RS01585 (HIEAAJJG_00311)	-	304604..305518 (+)	915	WP_012514937.1	ABC transporter permease	-
I2439_RS01590 (HIEAAJJG_00312)	-	305528..306559 (+)	1032	WP_115250570.1	ABC transporter permease	-
I2439_RS01595 (HIEAAJJG_00313)	oppD	306572..307618 (+)	1047	WP_196819836.1	ABC transporter ATP-binding protein	Regulator
I2439_RS01600 (HIEAAJJG_00314)	amiF	307618..308553 (+)	936	WP_115250572.1	ATP-binding cassette domain-containing protein	Regulator
I2439_RS01605 (HIEAAJJG_00315)	rnjA	309173..310855 (-)	1683	WP_012514941.1	ribonuclease J1	-
I2439_RS01610 (HIEAAJJG_00316)	-	310857..311087 (-)	231	WP_014622279.1	DNA-dependent RNA polymerase subunit epsilon	-
I2439_RS01615 (HIEAAJJG_00317)	tsaB	311373..312071 (+)	699	WP_196819837.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
I2439_RS01620 (HIEAAJJG_00318)	rimI	312074..312499 (+)	426	WP_196819838.1	ribosomal protein S18-alanine N-acetyltransferase	-
I2439_RS01625 (HIEAAJJG_00319)	tsaD	312489..313505 (+)	1017	WP_115250575.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35112.26 Da
• Isoelectric Point: 9.0093

>NTDB_id=507810 I2439_RS01600 WP_115250572.1 307618..308553(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MTEARKKLIEVKNVSLTFNKRKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=507810 I2439_RS01600 WP_115250572.1 307618..308553(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGAGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAAGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATCTTTAATGGAGAAAACGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGTATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCTGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCGATCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

3D structure

• AlphaFold DB: A0A380JNN6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524