Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2438_RS04510 Genome accession   NZ_CP065190
Coordinates   905622..906500 (+) Length   292 a.a.
NCBI ID   WP_138119110.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ36     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 900622..911500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2438_RS04480 (HCFMJIKG_00881) - 900815..901690 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  I2438_RS04485 (HCFMJIKG_00882) atpD 901858..903264 (+) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  I2438_RS04490 (HCFMJIKG_00883) - 903277..903693 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  I2438_RS04495 (HCFMJIKG_00884) - 903827..904063 (+) 237 WP_012678109.1 DUF1146 family protein -
  I2438_RS04500 (HCFMJIKG_00885) murA 904127..905398 (+) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2438_RS04505 (HCFMJIKG_00886) - 905402..905590 (+) 189 WP_041785421.1 DNA-directed RNA polymerase subunit beta -
  I2438_RS04510 (HCFMJIKG_00887) endA 905622..906500 (+) 879 WP_138119110.1 DNA/RNA non-specific endonuclease Machinery gene
  I2438_RS04515 - 906514..906672 (+) 159 WP_012515438.1 hypothetical protein -
  I2438_RS04520 (HCFMJIKG_00888) pheS 907415..908458 (+) 1044 WP_012515439.1 phenylalanine--tRNA ligase subunit alpha -
  I2438_RS04525 (HCFMJIKG_00889) pheT 908648..911053 (+) 2406 WP_231146287.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31856.90 Da        Isoelectric Point: 10.1657

>NTDB_id=507763 I2438_RS04510 WP_138119110.1 905622..906500(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=507763 I2438_RS04510 WP_138119110.1 905622..906500(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTGGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.142

77.397

0.527
  endA Streptococcus pneumoniae D39

68.142

77.397

0.527
  endA Streptococcus pneumoniae R6

68.142

77.397

0.527
  endA Streptococcus pneumoniae TIGR4

68.142

77.397

0.527