Detailed information NTG0507750

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: I2438_RS01840
• Genome accession: NZ_CP065190
• Coordinates: 333186..334121 (+)
• Length: 311 a.a.
• NCBI ID: WP_012514940.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ36
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 328186..339121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2438_RS01820 (HCFMJIKG_00351)	-	328347..330005 (+)	1659	WP_165627040.1	peptide ABC transporter substrate-binding protein	-
I2438_RS01825 (HCFMJIKG_00352)	-	330172..331086 (+)	915	WP_164437536.1	ABC transporter permease	-
I2438_RS01830 (HCFMJIKG_00353)	-	331096..332127 (+)	1032	WP_012678545.1	ABC transporter permease	-
I2438_RS01835 (HCFMJIKG_00354)	oppD	332140..333186 (+)	1047	WP_012514939.1	ABC transporter ATP-binding protein	Regulator
I2438_RS01840 (HCFMJIKG_00355)	amiF	333186..334121 (+)	936	WP_012514940.1	ABC transporter ATP-binding protein	Regulator
I2438_RS01845 (HCFMJIKG_00356)	rnjA	334766..336448 (-)	1683	WP_012514941.1	ribonuclease J1	-
I2438_RS01850 (HCFMJIKG_00357)	-	336450..336680 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
I2438_RS01855 (HCFMJIKG_00358)	tsaB	336966..337664 (+)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
I2438_RS01860 (HCFMJIKG_00359)	rimI	337667..338092 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
I2438_RS01865 (HCFMJIKG_00360)	tsaD	338082..339098 (+)	1017	WP_164437537.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35067.17 Da
• Isoelectric Point: 8.3565

>NTDB_id=507750 I2438_RS01840 WP_012514940.1 333186..334121(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMYEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=507750 I2438_RS01840 WP_012514940.1 333186..334121(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGGATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGTATGAAATCACTCCTGGGCATT
TTGTTTTAGCGACGCAGGCCGAAGCCGATCAGTATCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524