Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BTD91_RS21110 Genome accession   NZ_CP065150
Coordinates   1325063..1325776 (+) Length   237 a.a.
NCBI ID   WP_167514280.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320063..1330776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS05680 (BTD91_05680) - 1320987..1323317 (+) 2331 WP_077679814.1 Tex family protein -
  BTD91_RS05685 (BTD91_05685) - 1323526..1323999 (-) 474 WP_017055619.1 hypothetical protein -
  BTD91_RS05690 (BTD91_05690) bioH 1324193..1324969 (-) 777 WP_077679813.1 pimeloyl-ACP methyl ester esterase BioH -
  BTD91_RS21110 (BTD91_05695) comF 1325063..1325776 (+) 714 WP_167514280.1 ComF family protein Machinery gene
  BTD91_RS05700 (BTD91_05700) nfuA 1325886..1326470 (+) 585 WP_029626881.1 Fe-S biogenesis protein NfuA -
  BTD91_RS05705 (BTD91_05705) nudE 1326764..1327315 (+) 552 WP_017055616.1 ADP compounds hydrolase NudE -
  BTD91_RS05710 (BTD91_05710) cysQ 1327373..1328200 (+) 828 WP_046223426.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BTD91_RS05715 (BTD91_05715) - 1328320..1329099 (-) 780 WP_077679812.1 type II secretion system protein N -
  BTD91_RS05720 (BTD91_05720) - 1329101..1329589 (-) 489 WP_017055613.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27323.61 Da        Isoelectric Point: 9.0472

>NTDB_id=507448 BTD91_RS21110 WP_167514280.1 1325063..1325776(+) (comF) [Vibrio kanaloae strain R17]
MLSDWLQKHTPHLVTSQCHLCKLEKLLSDTHPRWCQTCLDLFCQQPRCQQCGLKTLTNVEQCGQCLSNPPPWHRLYCVGD
YVFPTARYIQQMKYADKFWFARDLSKLLAPRIQHPAPLITSVPLHWGRYIHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STVSQQGLTKSARQINLKNAFTLRNMNFSTNNYSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=507448 BTD91_RS21110 WP_167514280.1 1325063..1325776(+) (comF) [Vibrio kanaloae strain R17]
ATGTTATCCGATTGGCTACAAAAACACACACCGCATCTGGTCACATCACAATGCCACCTGTGCAAGCTAGAAAAGCTCCT
CAGCGATACTCATCCTCGGTGGTGCCAAACTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAGCAATGTGGCTTGA
AAACCTTAACTAACGTCGAGCAATGTGGTCAATGTCTATCGAACCCACCACCTTGGCATCGTCTCTATTGTGTGGGTGAC
TACGTCTTTCCAACAGCACGCTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACGTATTCAGCACCCAGCGCCATTGATCACTAGTGTGCCTCTACATTGGGGGCGGTATATTCATAGGGGCT
TTAATCAGAGCCAGTTATTAGCCCATTACACAGCCCAGGAACTGAACGTTAAAAGTGCAGTTTTATTTCGTCGATCTCGT
TCGACGGTTTCGCAGCAAGGATTAACCAAATCCGCAAGGCAGATCAATCTAAAAAACGCTTTCACGCTGCGCAATATGAA
TTTTTCAACGAACAATTATTCTCACATCGCGATAATTGATGATGTTGTAACCACAGGCAGCACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.237

99.578

0.54
  comF Vibrio campbellii strain DS40M4

47.737

100

0.489