Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ20_RS17890 Genome accession   NZ_CP065137
Coordinates   3559309..3560088 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. A1(2020)     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554309..3565088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS17870 trmFO 3554996..3556303 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRJ20_RS17875 xerC 3556373..3557290 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  IRJ20_RS17880 hslV 3557306..3557851 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  IRJ20_RS17885 hslU 3557868..3559271 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  IRJ20_RS17890 codY 3559309..3560088 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ20_RS17895 flgB 3560442..3560831 (+) 390 WP_062623352.1 flagellar basal body rod protein FlgB -
  IRJ20_RS17900 flgC 3560831..3561283 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  IRJ20_RS17905 fliE 3561294..3561614 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  IRJ20_RS17910 fliF 3561657..3563267 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  IRJ20_RS17915 fliG 3563280..3564296 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IRJ20_RS17920 fliH 3564289..3565044 (+) 756 WP_015417466.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=507263 IRJ20_RS17890 WP_003154263.1 3559309..3560088(+) (codY) [Bacillus sp. A1(2020)]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=507263 IRJ20_RS17890 WP_003154263.1 3559309..3560088(+) (codY) [Bacillus sp. A1(2020)]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471