Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SANR_RS01420 Genome accession   NC_022239
Coordinates   262867..264138 (-) Length   423 a.a.
NCBI ID   WP_003037622.1    Uniprot ID   I0SAK9
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257867..269138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS11030 - 258631..258828 (-) 198 Protein_242 tyrosine-type recombinase/integrase -
  SANR_RS01395 (SANR_0270) - 259274..260041 (+) 768 WP_020999458.1 epoxyqueuosine reductase QueH -
  SANR_RS01400 (SANR_0271) - 260228..260866 (+) 639 WP_020999459.1 deoxynucleoside kinase -
  SANR_RS01405 (SANR_0272) - 260932..261591 (+) 660 WP_020999460.1 HD domain-containing protein -
  SANR_RS11420 (SANR_0273) - 261662..262174 (-) 513 Protein_246 DUF308 domain-containing protein -
  SANR_RS01420 (SANR_0275) rarA 262867..264138 (-) 1272 WP_003037622.1 replication-associated recombination protein A Machinery gene
  SANR_RS01425 (SANR_0276) - 264240..264710 (+) 471 WP_003037612.1 DUF3013 family protein -
  SANR_RS01430 (SANR_0277) - 264760..265203 (+) 444 WP_003037586.1 NUDIX hydrolase -
  SANR_RS01435 (SANR_0278) - 265200..265679 (+) 480 WP_003037584.1 GNAT family N-acetyltransferase -
  SANR_RS01440 (SANR_0279) prmA 265683..266636 (+) 954 WP_003037598.1 50S ribosomal protein L11 methyltransferase -
  SANR_RS01445 (SANR_0280) - 266637..267377 (+) 741 WP_003037582.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SANR_RS11660 - 267544..267690 (+) 147 WP_003028899.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46712.14 Da        Isoelectric Point: 6.4377

>NTDB_id=50705 SANR_RS01420 WP_003037622.1 262867..264138(-) (rarA) [Streptococcus anginosus C238]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTSADHAGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAIVAIDKALSDLRQNGNLPIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQDYLPEKIKNADYFTP
NENGKYERALGMTKNKIEQLKNH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=50705 SANR_RS01420 WP_003037622.1 262867..264138(-) (rarA) [Streptococcus anginosus C238]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTCGGTGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCCGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGCTGCTGTTAGACGAGATTCATCGCTTGGACAAGACCAA
ACAGGACTTCCTCCTACCGCTCTTAGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGAGTACAGATTTTCGAGCTGGAGCCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGACACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAACGGAGACTTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTCCTCTCTACCTCAGCGGATCATGCAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTACAAAAAAGCTACATCACTATGGACAAAGACGGAGACGGTCACTAT
GACGTCCTGTCCGCTTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGTCTCGCACGACGTCTGACGGTCATCGCTTATGAGGACATTGGTCTGGCAAACCCCGATGCTC
AGATTCATACAGTGACTGCACTTGAAGCCGCTCAGAAAATCGGCTTCCCCGAAGCTCGCATCCTCATTGCCAATATTGTC
ATTGACCTAGCGCTTTCTCCTAAGTCTAATTCTGCCATAGTAGCTATAGATAAAGCTCTTTCTGATTTGCGACAAAATGG
AAACTTACCTATCCCCCGCCATCTACGAGACGGTCACTACGCTGGTAGCAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTGCAGCAAGACTACCTTCCTGAAAAAATTAAAAATGCCGATTATTTTACTCCG
AACGAAAACGGGAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGAACAACTCAAAAACCACTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SAK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596